FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dxr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 79/218 (36.24%), Postives = 121/218 (55.50%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL++VA + ++++V AL A +N+  + +     +P++  + +      +K+ L +   K E+  GE  ++      +  TV+  IVG AGL  T+AA+ AGK + LANKE+L+  G   +        ++LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +    A KHPNWSMG+KI+VDSA
Sbjct:    6 ILGATGSIGASTLNVVACNPEQYKVFALVANTNVAKMLEICIAHQPKIAHMVDAKAAQALKQQLPS-HLKIEVTTGEDELLSLVSCSEVDTVMAAIVGAAGLPSTLAAVNAGKRVLLANKESLVMSGQLFIEAMQNSGAQVLPVDSEHNAIFQCLSERSQLEIGRCDLTGAGVSHILLTGSGGPFLTSDLSSLVNMTPDQACKHPNWSMGRKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_RHOBA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Rhodopirellula baltica GN=dxr PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 95/270 (35.19%), Postives = 135/270 (50.00%), Query Frame = 1
Query:   64 FRKTWDGPKPISVLGSTGSIGTQTLDIV-----AEHEDKFRVVALAAGSNITLLADQVK--RFKPQVVAVRNESLLDEIKEAL--------ANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI--------------QGL-PEGA--------------------LRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            FR T      ++VLG+TGSIG   LD++      + +  + V +++  S I  L +        P+ V V +  +  +  +AL        + + E+  +  G   ++ AA   D   VV  IVG AGL+ T+AA+ AGK +ALANKETL+  GP V   A  +  ++LP DSEHSAIFQC+              Q + PE                      +RR+ILTASGG FRDW   +++E  +  AL HP W MG KIT+DSA
Sbjct:   14 FRSTNRPVSRVAVLGATGSIGVAALDVIENLNRCDPDFAWEVSSMSGHSQIDPLIELAGGCHTPPKCVVVSDAEMEAQAAKALRTASTQTSSRLTERCRLDVGPDALVRAATENDVDVVVAAIVGRAGLESTLAAVHAGKRVALANKETLVVAGPVVTRAAANNGAQLLPVDSEHSAIFQCLAESRARQSQYATAKQSIQPESVRATDPPSSTTDSPAKTHWPGVRRLILTASGGPFRDWTTAQMREATIEQALAHPTWKMGAKITIDSA 283          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PERMH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=dxr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 87/212 (41.04%), Postives = 118/212 (55.66%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K ++VLGSTGSIGTQTLDIV ++ D+  V  LAA      L DQ+  FKP+ V +     +  +K            L GE G+ + A+  D    + GI G  G+ PT   +E  K +A ANKE +I  G        K++  I P DSEHSAIFQC+    +  + +IILTASGG F + P E+ + +    AL HP W MGKK+++DSA
Sbjct:    2 KRLAVLGSTGSIGTQTLDIVRKYRDRLEVSLLAASRVSEKLLDQIDEFKPEYVYIAEGEKIKGVKT-----------LIGEDGLYKLAQL-DIDLFINGISGINGILPTYLLLENNKKLATANKEAIICLGEIY---GDKYS-DIFPIDSEHSAIFQCLLSGRKEEVEKIILTASGGPFLNLPKEEFRYITPDQALNHPRWKMGKKVSIDSA 197          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CAMJR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter jejuni (strain RM1221) GN=dxr PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 83/208 (39.90%), Postives = 120/208 (57.69%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + GSTGSIG   L + A       + ALA G NI LL +Q+ RFKP+ VA+++      +K           +  G++G+ +         ++  IVG AGLK T+ A E GK+IALANKE+L+  G F+         K LP DSEH+A+   ++G     + ++ +TASGGAF  + ++ L +V + DALKHPNW+MG KIT+DSA
Sbjct:    3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPKFVAIKDSKNKHLVKH--------DRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL------KGAKFLPVDSEHAALKFLLEGKKN--IAKLYITASGGAFYKYKIKDLNQVSLKDALKHPNWNMGAKITIDSA 192          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CAMJE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter jejuni GN=dxr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.844e-33
Identity = 83/208 (39.90%), Postives = 120/208 (57.69%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + GSTGSIG   L + A       + ALA G NI LL +Q+ RFKP+ V++++      +K           +  G++G+ +         ++  IVG AGLK T+ A E GK+IALANKE+L+  G F+         K LP DSEH+A+   ++G     + ++ +TASGGAF  + ++ L +V V DALKHPNW+MG KIT+DSA
Sbjct:    3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPKFVSIKDSKNKHLVKH--------DRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL------KGAKFLPVDSEHAALKFLLEGKKN--IAKLYITASGGAFYRYKIKDLNQVSVKDALKHPNWNMGAKITIDSA 192          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THENN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=dxr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 88/212 (41.51%), Postives = 129/212 (60.85%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + + +LG TGSIGTQTLD++ + E   R+V ++  +N+ L    VK F+ + V V      D   E  A V + P  L   + ++EA + PD   V   + G +GL+  +AA+E  + + LANKE+L+ GG  V     + +++++P DSEHSAIFQ I    E  +++I+LTASGGA RDW +EK++     D LKHP WSMG +ITVDSA
Sbjct:    4 RTLVILGVTGSIGTQTLDVLRKIEG-IRLVGISFHTNVELAKKIVKEFQVENVVVTG----DVSFECSAKVWKGPHAL---EDMMEALK-PDITMVA--VSGFSGLRAVLAALEHSRRVCLANKESLVCGGFLVKRKLKEKSVELIPVDSEHSAIFQVI----EPDVQKIVLTASGGALRDWDLEKIETATPNDVLKHPVWSMGARITVDSA 200          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCLE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium leprae GN=dxr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 88/212 (41.51%), Postives = 120/212 (56.60%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI--TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGSIGTQ L+++A + D+F VV LAAG     TLL  +          V N ++ D+    LA   + P    G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGG  VL  A     +I+P DSEHSA+ QC++G     + +++LTASGG FR W    L+ V    A  HP WSMG   T++SA
Sbjct:   15 VLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGAQLDTLLRQRA------ATGVTNIAIADDRAAQLAG--DIP--YHGTDAVTRLVEETEADVVLNALVGALGLRPTLAALHTGARLALANKESLVAGGSLVLAAAQPG--QIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWNAGDLERVTPEQAGVHPTWSMGTMNTLNSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCLB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycobacterium leprae (strain Br4923) GN=dxr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 88/212 (41.51%), Postives = 120/212 (56.60%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI--TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGSIGTQ L+++A + D+F VV LAAG     TLL  +          V N ++ D+    LA   + P    G   V       +A  V+  +VG  GL+PT+AA+  G  +ALANKE+L+AGG  VL  A     +I+P DSEHSA+ QC++G     + +++LTASGG FR W    L+ V    A  HP WSMG   T++SA
Sbjct:   15 VLVLGSTGSIGTQALEVIAANPDRFEVVGLAAGGAQLDTLLRQRA------ATGVTNIAIADDRAAQLAG--DIP--YHGTDAVTRLVEETEADVVLNALVGALGLRPTLAALHTGARLALANKESLVAGGSLVLAAAQPG--QIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGGPFRGWNAGDLERVTPEQAGVHPTWSMGTMNTLNSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_AQUAE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Aquifex aeolicus GN=dxr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.851e-33
Identity = 76/210 (36.19%), Postives = 123/210 (58.57%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGS+G+QTL +     D+  +V + A      L  Q K++KP+ V     S  +  KE L ++ E  + L G++G+   A   ++  ++  I G  G+KP    I+AGK +  +NKE+++  G  +     K+  +++P DSEH+A+FQ +  +    ++ + LTASGG F+D  +E+LK   V +AL+HP W+MG KIT+DSA
Sbjct:    3 LGVLGSTGSVGSQTLQVYENFRDEIELVGILANRASEKLLQQAKKYKPKYVV----SYQEPAKEWLESLPEGVKYLKGDEGL--KAIIEESERLMNAISGIYGIKPAYEVIKAGKTLLASNKESILCLGEII----RKNRERVIPVDSEHNALFQLLSSVKREEVKHVYLTASGGPFKDKSLEELKTASVEEALRHPRWNMGAKITIDSA 202          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEON (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella oneidensis GN=dxr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.335e-33
Identity = 84/223 (37.67%), Postives = 118/223 (52.91%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-----EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ +   +RV AL A +++  +       +PQV  + +       K ALA   + P     ++ +GE  +I     P   TV+  IVG AGL PT+AA++AGK + LANKE L+  G   +         +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPTAYRVYALVANASVDKMLTLCLAHRPQVAHMVDH------KAALALKAQLPAALNIQVTSGEDELIALVTAPAVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKEALVMSGELFIEATRASGATLLPVDSEHNAIFQCLPEEVQSNLGRCDLAASGISHILLTGSGGPFLTAELSNLAAMTPAQACKHPNWSMGPKISVDSA 222          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_SHEPA2.177e-3336.241-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_RHOBA2.177e-3335.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PERMH2.177e-3341.041-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMJR2.177e-3339.901-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMJE2.844e-3339.901-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THENN3.714e-3341.511-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCLE3.714e-3341.511-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCLB3.714e-3341.511-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_AQUAE4.851e-3336.191-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEON6.335e-3337.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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