FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHESA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sp. (strain ANA-3) GN=dxr PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.274e-33
Identity = 81/218 (37.16%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ + D +RV AL A +++  +       +PQV  + +      ++  L   E   ++ +GE  +I      +  TV+  IVG AGL PT+AA++AGK + LANKE L+  G   +         +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPDAYRVYALVANASVDKMLALCVTHRPQVAHMVDSQAALALQAKLPP-ELNIQVTSGEDELIALVTATEVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKEALVMSGELFIEATKASGATLLPVDSEHNAIFQCLPEEVQANLGRCDLAASGISHILLTGSGGPFLTAELASLASMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHESR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sp. (strain MR-7) GN=dxr PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.411e-32
Identity = 81/218 (37.16%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ + D +RV AL A +++  +       +PQV  + +      ++  L   E   ++ +GE  +I      +  TV+  IVG AGL PT+AA++AGK + LANKE L+  G   +         +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPDAYRVYALVANASVDKMLALCVTHRPQVAHMVDSQAALALQAKLPP-ELNIQVSSGEDELIALVTATEVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKEALVMSGELFIEATKASGATLLPVDSEHNAIFQCLPEEVQANLGRCDLAASGISHILLTGSGGPFLTAELASLAAMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHESM (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sp. (strain MR-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 81/218 (37.16%), Postives = 117/218 (53.67%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ + D +RV AL A +++  +       +PQV  + +      ++  L   E   ++ +GE  +I      +  TV+  IVG AGL PT+AA++AGK + LANKE L+  G   +         +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPDAYRVYALVANASVDKMLALCITHRPQVAHMVDSQAALALQAKLPP-ELNIQVSSGEDELIALVTATEVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANKEALVMSGELFIEATKASGATLLPVDSEHNAIFQCLPEEVQANLGRCDLAASGISHILLTGSGGPFLTAELASLAAMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHELP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dxr PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.843e-32
Identity = 76/218 (34.86%), Postives = 118/218 (54.13%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL ++ ++ + ++  AL A  ++  + D   ++ P +  + +     E++  L        + +GE  +      P+   V+  IVG AGL  T+AA++AGK + LANKE+L+  G   +      N K+LP DSEH+AIFQC+            L    +  I+LT SGG F    ++ L ++    A KHPNWSMG+KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVIEQNPEAYKAFALVAHKSVDKMLDLCIKYNPSIAHMVDPQAAAELQRRLP-AHMAIAVSSGEDELAAIVALPEVDCVMAAIVGAAGLPATLAAVKAGKRVLLANKESLVMSGRLFIDAMQGSNAKVLPVDSEHNAIFQCLPEPAQQAIGACDLAGAGISHILLTGSGGPFLTSDLDSLSQMTPDQACKHPNWSMGRKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHESH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella sediminis (strain HAW-EB3) GN=dxr PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 78/218 (35.78%), Postives = 120/218 (55.05%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG+ TL ++  + D + V AL A +++  +    +  +PQ+  + +      +K+ L       EI  GE  +I+        +V+  IVG AGL PT+AA++AGK + LANKE+L+  G   +    +   ++LP DSEH+AI+Q +            L +  +  I+LT SGG F    +  L  +  A A KHPNWSMG+KI+VDSA
Sbjct:    6 ILGATGSIGSSTLSVIESNPDAYSVYALVANTSVEKMLALCETHRPQIAHMVDGQAAKSLKQRLPT-SLNVEITTGEDQLIDIVSASCVDSVMAAIVGAAGLVPTLAAVKAGKRVLLANKESLVMSGRLFIDEMRRSGARVLPVDSEHNAIYQALPESLQSNIGYCELEKAGVSHILLTGSGGPFLTSELASLASMTPAQACKHPNWSMGRKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THEP1 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=dxr PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.144e-32
Identity = 82/212 (38.68%), Postives = 131/212 (61.79%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + + +LG+TGSIGTQTLD++ + +   R++ ++  SN+ L    VK F  + VAV  +    E +++  NV + P  +   + ++EA + PD   V   + G +GL+  ++++E  K + LANKE+L+ GG  V     +   +++P DSEHSAIFQ I+  PE  + +++LTASGGA RDW + K+   +  D L+HP W+MG +ITVDSA
Sbjct:    4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAVTGDV---EFEDSSINVWKGPHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLSSLEHSKRVCLANKESLVCGGFLVKKKLKEKRTELIPVDSEHSAIFQVIE--PE--VEKVVLTASGGALRDWEISKIDRARPEDVLRHPVWNMGARITVDSA 201          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CAMHC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=dxr PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 82/208 (39.42%), Postives = 119/208 (57.21%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIGT +L+I  +      V ALA   N+  L  Q+  F P+ V +++E L  ++           +I +GE G+ E     ++ TV+  +VG AGL P++    +GK + L+NKE+L+ GG F+         KI   DSEH  +   ++   + A  ++I+TASGGAF   P++ L   K ADALKHPNW+MG KIT+DSA
Sbjct:    3 VLGSTGSIGTNSLEIARKFN--IEVEALACAENVKKLNAQIAEFHPKFVYIKDEKLKSKVAHN--------KIFSGENGICEMLNRCESKTVINALVGFAGLIPSLKIQNSGKILCLSNKESLVVGGKFL------DTSKIRAIDSEHFGLKFLLENSAKPA--KMIITASGGAFYKTPIKDLSSKKAADALKHPNWNMGAKITIDSA 192          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELHP (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter hepaticus GN=dxr PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32
Identity = 80/208 (38.46%), Postives = 121/208 (58.17%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGSTGSIGT  L+ VA H D   + +L AG NITLL  Q+  + P+ V + +++      +A   +    ++  G +G++E      +  ++  +VG AGLKP+  A++  K +ALANKE+L+  G  +       N  I P DSEH  ++      P   + ++ +TASGGAFRD+P++K+      +ALKHPNW MG KIT+DSA
Sbjct:    3 LLGSTGSIGTNALE-VASHFD-IPIESLCAGKNITLLNQQIAHYAPKNVCIADKN------DAHKLINGNYKLFFGSEGILEMIESSHSHLLLNALVGFAGLKPSFKALQCNKKLALANKESLVNAGWLL------QNADITPIDSEHFGLWYLQNNRP---ITKLYITASGGAFRDYPLDKIALATPQEALKHPNWQMGYKITIDSA 193          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THEMA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermotoga maritima GN=dxr PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.560e-31
Identity = 81/212 (38.21%), Postives = 130/212 (61.32%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + + +LG+TGSIGTQTLD++ + +   R++ ++  SN+ L    VK F  + VA+  +    E +++  NV +    +   + ++EA + PD   V   + G +GL+  +A++E  K + LANKE+L+ GG  V     +   +++P DSEHSAIFQ ++  PE  + +++LTASGGA RDW + K+   +  D LKHP W+MG +ITVDSA
Sbjct:    4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAITGDV---EFEDSSINVWKGSHSI---EEMLEALK-PDITMVA--VSGFSGLRAVLASLEHSKRVCLANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME--PE--VEKVVLTASGGALRDWKISKIDRARPEDVLKHPVWNMGARITVDSA 201          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_FERNB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=dxr PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 79/212 (37.26%), Postives = 124/212 (58.49%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LG+TGSIGTQ++D++++ ++ +++V ++ G N  L  + V+RF              ++K     VE          G +     PD    +  I G  G+K T+ A++  + IALA KE+++  G FV  LA K+N++I+P DSEHSAIFQ    + E  +  I++TASGGA RD P++K+  +   + LKHP W+MG +ITVDSA
Sbjct:    4 KTVVILGATGSIGTQSVDVISKLKN-YKLVGISFGKNRNLAEEIVQRF--------------DVKVYHGGVELSVGRRVDSIGALLELTKPDIT--ICAIPGFEGVKATIEALKYTRRIALATKESMVCAGKFVKELAKKNNVEIVPVDSEHSAIFQ----IYEPHIDHIVITASGGAVRDLPLDKIAGLTPEEVLKHPTWNMGGRITVDSA 194          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_SHESA8.274e-3337.161-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHESR1.411e-3237.161-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHESM1.843e-3237.161-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHELP1.843e-3234.861-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHESH2.407e-3235.781-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP13.144e-3238.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMHC4.106e-3239.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELHP7.004e-3238.461-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEMA1.560e-3138.211-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_FERNB7.744e-3137.261-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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