FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CAMLR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=dxr PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 84/208 (40.38%), Postives = 119/208 (57.21%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG  TL I  E      + AL+ G NI LL +Q+  FKP+ V +++E   D+      ++ +   I   + G+ +      +  VV  IVG AGL  ++ A + GK +ALANKE+L+  G F          KI   DSEH+A+   I    +  ++++ +TASGGAF  + ++ LK V V +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGVNTLFIAKEKN--ISIEALSCGKNIKLLNEQIALFKPKFVCIQDEK--DK------HLVDHKNIFCAQDGLKKMISECKSKFVVNAIVGFAGLNSSLIAQKLGKTLALANKESLVVAGKFF------DTSKIKAIDSEHAALKCLIDKRKD--IKKLFITASGGAFYKYKIKDLKNVSVKEALKHPNWSMGAKITIDSA 192          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.556e-30
Identity = 77/218 (35.32%), Postives = 111/218 (50.92%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL ++  +   F V  L A +++  +       +P+   + +E+   E+K  L N     ++  G + +          TV+  IVG AGL PT  A++AGK + LANKE L+  G   +  A      +LP DSEH+AIFQC+            L    +  I+LT SGG F +  +  L  +  A A  HPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVMVNNPADFHVYGLVANASVQKMLALCITHQPEYAHMVDENAAMELKSLLPN-HCVTQVTTGAEALNALVTDSRTDTVMAAIVGAAGLVPTFDAVKAGKRVLLANKEALVMSGELFMHTARASGATVLPVDSEHNAIFQCLPTNVQAQLGYCDLSANGISHILLTGSGGPFLNTDLATLSAMTPAQACNHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEB9 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS195) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCLPQEVQANLGRCDLAASGISHILLTGSGGPFLRSDLATLAAMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEB5 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPFAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCLPQEVQANLGRCDLAASGISHILLTGSGGPFLRSDLATLAAMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELPY (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori GN=dxr PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 82/209 (39.23%), Postives = 122/209 (58.37%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VA+ + S L++++   A      E+  G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G       H  +I +I P DSEH  ++  +Q       + +I++ASGGAFRD P+E +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--IEIEALSCGKNIALINEQIQVFKPKKVAILDPSDLNDLEPLGA------EVFVGLEGIDAMIEECTSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-------HLLDISQITPIDSEHFGLWALLQNKTLKP-KSLIISASGGAFRDTPLEFIPIQNAQNALKHPNWSMGSKITIDSA 195          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SHEB2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Shewanella baltica (strain OS223) GN=dxr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 75/218 (34.40%), Postives = 114/218 (52.29%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LG+TGSIG  TL +++ +   + V  L A +++  +       KP+V  + +E+   +++  L       ++  G   ++      +  TV+  IVG AGL PT+ A++AGK + LANKE L+  G   +    +    +LP DSEH+AIFQC+            L    +  I+LT SGG F    +  L  +  A A KHPNWSMG KI+VDSA
Sbjct:    6 ILGATGSIGASTLSVISANPLAYSVYGLVANASVDKMLALCVAHKPKVAHMVDEAAAKQLRAVLP-ATLNIQVTTGMNDLLGLVTAAEVDTVMAAIVGAAGLVPTLEAVKAGKRVLLANKEALVMSGELFIEATKRSGAVLLPVDSEHNAIFQCLPQEVQANLGRCDLAASGISHILLTGSGGPFLRSDLATLAAMTPAQACKHPNWSMGPKISVDSA 222          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELPH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain HPAG1) GN=dxr PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.460e-29
Identity = 82/208 (39.42%), Postives = 121/208 (58.17%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + S L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G  +L ++     +I P DSEH  ++  +Q       + +I++ASGGAFRD P+E +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPSDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAGN-LLDIS-----QITPVDSEHFGLWALLQNKTLKP-KSLIISASGGAFRDTPLELIAIQNAQNALKHPNWSMGSKITIDSA 195          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain Shi470) GN=dxr PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 82/209 (39.23%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A V        G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G       H  +I +I P DSEH  ++  +Q       + +I++ASGGAFRD P+E +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKF--KVGIEALSCGKNIALINEQIKVFKPKKVAILDSNDLNGLEPLGAKV------FVGLEGIDAMIEECVSNLVINAIVGVAGLRASFKSLQTNKKLALANKESLVSAG-------HLLDISQITPIDSEHFGLWALLQNKALKP-KSLIISASGGAFRDTPLELIPIQNAQNALKHPNWSMGSKITIDSA 195          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELPJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori J99 GN=dxr PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.907e-29
Identity = 82/209 (39.23%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +   K  + AL+ G NI L+ +Q+K FKP+ VA+ + + L+ ++   A      E+  G  G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G       H  +I +I P DSEH  ++  +Q       + +I++ASGGAFRD P++ +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKFGVK--IEALSCGKNIALINEQIKVFKPKKVAILDPNDLNNLEPLGA------EVFVGLDGIDAMIEECVSNLVINAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-------HLLDISQITPVDSEHFGLWALLQNKTLKP-KSLIISASGGAFRDTPLDLIAIQNAQNALKHPNWSMGDKITIDSA 195          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELP2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain P12) GN=dxr PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 82/209 (39.23%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q+K FKP+ VA+ + + L++++   A V        G +G+        +  V+  IVG AGLK +  +++  K +ALANKE+L++ G       H  +I +I P DSEH  ++  +Q       + +I++ASGGAFRD P+E +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIKVFKPKKVAILDPNDLNDLEPLGAKV------FVGLEGIDAMIEECVSNLVLNAIVGVAGLKASFKSLQRNKKLALANKESLVSAG-------HLLDISQITPVDSEHFGLWALLQNKTLKP-KSLIISASGGAFRDTPLELIAIQNAQNALKHPNWSMGSKITIDSA 195          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_CAMLR1.725e-3040.381-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEFN6.556e-3035.321-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB98.562e-3034.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB58.562e-3034.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPY8.562e-3039.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SHEB21.118e-2934.401-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPH1.460e-2939.421-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPS1.907e-2939.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPJ1.907e-2939.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELP22.491e-2939.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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