FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PELUB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelagibacter ubique GN=dxr PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.249e-29
Identity = 76/213 (35.68%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++ GSTGSIG+  L I+ + +  F++  L    N   L  QVK F  + V V + +      + L N + K  +      + +     + +   +  I G  GLKPT+  I+  K IA+ANKE++I G   +     K+    +P DSEH +I+  +    +    +I +TASGG FR+  ++K + + V DALKHPNWSMGKKIT+DSA
Sbjct:    2 KKIAIFGSTGSIGSSLLKIIKDDQKNFKIELLTVNKNYKKLIKQVKLFNVKNVIVTDYNSFLITTKLLKNAKVK--VFNNFDSLNKIFNTNNKIDYSMCAISGFDGLKPTLDIIKFTKTIAIANKESIICGWNLIKKDLKKYKTYFVPVDSEHFSIWSLLDNNKKNNFEKIYITASGGPFRNLSLKKFRNISVKDALKHPNWSMGKKITIDSA 212          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELPG (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Helicobacter pylori (strain G27) GN=dxr PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.248e-29
Identity = 81/209 (38.76%), Postives = 121/209 (57.89%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            VLGSTGSIG   L I  +      + AL+ G NI L+ +Q++ FKP+ VAV + + L+ ++   A      E+  G +G+        +  V+  IVG AGL+ +  +++  K +ALANKE+L++ G       H  +I +I P DSEH  ++  +Q       + +I++ASGGAFRD P+E +      +ALKHPNWSMG KIT+DSA
Sbjct:    3 VLGSTGSIGKNALKIAKKFG--VEIEALSCGKNIALINEQIQVFKPKKVAVLDPNDLNNLEPLGA------EVFVGLEGIDAMIEECASNLVLNAIVGVAGLRASFKSLQRNKKLALANKESLVSAG-------HLLDISQITPIDSEHFGLWALLQNKTLKP-KSLIISASGGAFRDTPLELIAIQNAQNALKHPNWSMGSKITIDSA 195          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_TROWT (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain Twist) GN=dxr PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.236e-28
Identity = 82/213 (38.50%), Postives = 116/213 (54.46%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++GSTGSIGTQ +D + ++ D F VV LAA +  +LL +Q      QV+  +N +                      QG  EAA      +A  V+  I G AGL  T A ++ GK +ALANKE+LI GG + L +      +I P DSEHSAI Q ++      + ++ILTASGG F D   E L+ + + DAL HP W+MG  I+++SA
Sbjct:    4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVLGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFLDMT-TFKGQITPVDSEHSAIAQAMKSGKFSEVNKLILTASGGPFYD--RESLEGITLKDALDHPTWNMGPMISINSA 186          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_TROW8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Tropheryma whipplei (strain TW08/27) GN=dxr PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.615e-28
Identity = 82/213 (38.50%), Postives = 115/213 (53.99%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA---RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + ++GSTGSIGTQ +D + ++ D F VV LAA +  +LL +Q      QV   +N +                      QG  EAA      +A  V+  I G AGL  T A ++ GK +ALANKE+LI GG + L +      +I P DSEHSAI Q ++      + ++ILTASGG F D   E L+ + + DAL HP W+MG  I+++SA
Sbjct:    4 VIIVGSTGSIGTQAIDFILKNRDSFLVVGLAASTQTSLLREQA-----QVFGTKNTA----------------------QGASEAAELIEATEADVVLNAITGAAGLLSTYATLKTGKRLALANKESLIMGGKYFLDMT-SFKGQITPVDSEHSAIAQAMKSGKFSEVNKLILTASGGPFYD--RESLEGITLKDALDHPTWNMGPMISINSA 186          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CORJK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Corynebacterium jeikeium (strain K411) GN=dxr PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.332e-27
Identity = 79/221 (35.75%), Postives = 124/221 (56.11%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQV--VAVRNESLLDEIKEALA--------NVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLGSTGSIGTQ L+++A++ ++F +V ++A GS   +LA QV+ F   +  VAV +E   + +             +  E  E +  E G  +         ++  +VG  GL  T+A +     +ALANKE+L+AGG  VL  A +   +++P DSEHSA+ QC++      +  ++LTASGG FR +   +L++V    A  HP WSMG+  T++SA
Sbjct:   20 VVVLGSTGSIGTQALEVMADNPERFELVGISAHGSKPDVLAQQVRDFGLDLGRVAVASEHTAEWLDGEFGAHCIRGKDSARELVEAVGPELGECDV--------ILNALVGSLGLDATLATLGTKAKLALANKESLVAGGQLVLKAADEG--QLIPVDSEHSAMAQCLRSGRVDEVDSLVLTASGGPFRGYTRAQLEDVTPLQAANHPTWSMGQMNTLNSA 230          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CAMFF (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=dxr PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.279e-25
Identity = 77/212 (36.32%), Postives = 117/212 (55.19%), Query Frame = 1
Query:  100 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV---IEAARHPDAVTVV-TGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            +LGS+GSIG     +  ++  K    ALA  ++   L  Q+ +F P+ V + +  L         N+ E   +   + G+   +EA       TVV   +VG +GL+P++ + + G  +ALANKE+L+AGG F+          I P DSEH  +   ++  P  A++++I+TASGGAF D  + +L+ V    ALKHPNWSMG KIT+DSA
Sbjct:    3 LLGSSGSIGKNVAFLAMKYGIKLD--ALACKTDYKELNSQISKFNPKFVYIEDNKL--------KNLVEHSRVFTSKDGIDKFLEACYDEFGSTVVINSLVGFSGLRPSLVSQKLGFKLALANKESLVAGGKFL------DTKSINPIDSEHFGLKFLLKNRP--AVKKMIITASGGAFYDMHINELEFVTAKSALKHPNWSMGAKITIDSA 196          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_TREPA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Treponema pallidum GN=dxr PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.293e-25
Identity = 77/210 (36.67%), Postives = 109/210 (51.90%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + VLG TGSIG   L ++    D+F +V  A+G   T  A  + R          E  L +I    +  E++     G   +       +A  VV GI G AGL  ++  ++    +ALANKE+++     +   A +    I+P DSEH+AIFQ I      A+ +++LTASGG FR +  E L  V V DAL+HP W MGKKI+VDSA
Sbjct:    6 VVVLGITGSIGAAALKLLRRFPDRFLLVG-ASGHRQTEYARALAR----------EFSLSDITMTGSCSEQE-----GRARIKRLLSSCEAEVVVNGIAGAAGLFASLEVLKTRCTLALANKESVVLAASLLHAAARESGATIVPVDSEHAAIFQLIAAHGAHAVAQVVLTASGGPFRTFSKECLAHVTVEDALQHPTWRMGKKISVDSA 199          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCPE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycoplasma penetrans GN=dxr PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.564e-23
Identity = 65/215 (30.23%), Postives = 117/215 (54.42%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV---AVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + V G+TG+IG  +L+I+   ++ + +V  +  +N     + + RF   +V   +V+ ++ ++  +E L      P+I                  ++  +VG +GL  T+ A++   D+ALANKE+L+  G  +  L    + +I P DSEHS+++  ++   +  ++ +I+T SGG F      +L  +  ADA+KHPNW+MGKKI++DSA
Sbjct:   12 KKVLVFGATGNIGFSSLEII--EKENYELVGFSFNNNYEKALEIINRFPNALVFSPSVKTKNTVNSFEELLEKTN--PDI------------------ILNALVGFSGLHITLLALKNNVDLALANKESLVVAGWLIEDLKRSSSSRIYPVDSEHSSLYDSLKNNNK-EIKELIITCSGGPFYKKEFNELLNINFADAVKHPNWNMGKKISIDSA 203          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BLOFL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Blochmannia floridanus GN=dxr PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 67/202 (33.17%), Postives = 105/202 (51.98%), Query Frame = 1
Query:  151 EHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP-EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ----------GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            ++ DKF V AL A +++ ++ +Q     PQ V +  E +   +K  L  +++   ++L+G +     +       VV+ + G A L+P  +AI  GK I LANKETL+  G   +   +K+N  +LP DSE++AIFQ +            L +  +  I+LT SGG        KL ++       HPNWSMG KI+V+SA
Sbjct:    7 QYRDKFAVRALVAHNDVAVMIEQCFLVSPQYVCMICEEVARNLKYKLVLMDKNNIQVLSGMKDACVLSALDAVDMVVSTMAGIARLQPIFSAIRVGKKILLANKETLVLSGQLFMTEVYKYNASVLPLDSEYNAIFQNLSVIYQKKLGQVSLSQYGICCIVLTDSGGVLYKITRTKLFKITPVQVYIHPNWSMGLKISVNSA 208          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MYCGA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycoplasma gallisepticum GN=dxr PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 58/210 (27.62%), Postives = 110/210 (52.38%), Query Frame = 1
Query:   94 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            I VLG+TGSIG Q +D++ +   K+++V  +   N     + +K+  P  V   ++   ++      NV+           +IE         ++  I G  G++ ++ A+   KD+ LANKE+L+  G  +  +       I P DSEHSA++  ++   +  ++++++TASG  + +  + +L+++   D L HPNW MG +I+++SA
Sbjct:    3 ILVLGATGSIGKQAIDVICQL--KYQLVGFSYYQNHNEANNILKQLNPNYVLCHSDPKYNK------NVKSD---------LIELIDKSKPKVIINAINGYHGIEASLIALSKKKDLLLANKESLVIAGSQLEAIRKDTKTTIYPIDSEHSALYDLLKDKKKNQIKQLMITASGAGYFNKDISELRKLTYNDLLNHPNWKMGAEISINSA 195          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_PELUB4.249e-2935.681-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELPG7.248e-2938.761-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TROWT1.236e-2838.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TROW81.615e-2838.501-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CORJK2.332e-2735.751-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CAMFF1.279e-2536.321-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_TREPA8.293e-2536.671-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCPE1.564e-2330.231-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BLOFL5.031e-2233.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MYCGA3.606e-2027.621-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
back to top