FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:326..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR1_BACCZ (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ZK / E33L) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.111e-53
Identity = 103/212 (48.58%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++    ++    +I  G  G+I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC+ G     + ++I+TASGGAFRD   E++K ++  DALKHPNW MG K+T+DSA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKMFQPRIVSVATKDLADTLR---MHISANTKITYGTDGLIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMKTLQAKDALKHPNWLMGAKLTIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_GEOBB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=dxr PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.450e-53
Identity = 108/212 (50.94%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIG  TLD+V  + D FRVVAL AG+N+ LL  Q++ F P +V+V        +  +L    +KPEI+ G +G+I AA   +   VV  IVG AGL PT AAI AGKD+ALANKETL+  G  V+ +  +  + + P DSEH A+FQ + G     + R+ILTASGG F +W  EKL+   VADAL HPNWSMG+KITVDSA
Sbjct:    2 KNLTILGSTGSIGVSTLDVVKAYPDMFRVVALTAGNNLELLKTQIETFSPDLVSVLTAEKAQALSRSLTG--KKPEIMHGVEGMIAAATASETTMVVAAIVGAAGLVPTTAAIMAGKDVALANKETLVTAGHLVMQMVREKKVNLYPVDSEHCAVFQSMAGHRSQDIARVILTASGGPFLNWGREKLQAATVADALNHPNWSMGRKITVDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THEPX (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter sp. (strain X514) GN=dxr PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 107/212 (50.47%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L  K +I +LP DSEHSAI QC++G  +  + R+ILTASGG FR    E L++V V +AL HPNW MGKKIT+DSA
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQMGKDIALANKEVLVTAGQIVMDLVKKKDISLLPVDSEHSAILQCLRGNDKKEVSRLILTASGGPFRGKKKEDLRKVTVNEALNHPNWKMGKKITIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_SYMTH (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Symbiobacterium thermophilum GN=dxr PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 109/214 (50.93%), Postives = 147/214 (68.69%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV--EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQ LD++  H  +FRVVALAAG  +  LA+Q  RF+P +++V +      ++  L     + +PEI  G +G+I AA HP++  V+T +VG  G++PT+AAIEAGKDIALANKETL+A G  V   A    +K+LP DSEHSAIFQ + G   G++RRI+LTASGG FR    + L  V   +AL+HP W+MG K+T+DSA
Sbjct:    3 KGIAILGSTGSIGTQALDVIDHHPGRFRVVALAAGRQVERLAEQALRFRPALLSVADADAAAALRALLLAEAGDYRPEIAWGREGLIRAATHPESGLVLTSVVGAMGVEPTLAAIEAGKDIALANKETLVAAGELVTAAAQARGVKLLPVDSEHSAIFQSLAGADPGSVRRILLTASGGPFRG--RKDLTGVTREEALRHPRWTMGAKVTIDSA 214          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_HELMI (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dxr PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.474e-53
Identity = 112/212 (52.83%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIG QTL++V   E +  V ALAAGSN   L  Q++ ++P++ A+      + + EAL        ++ GE G+ EAA  P+  TVVT + G  GL PT+AAIEAGK+IALANKETL+A GP V+  A +  + ILP DSEHSAIFQC+QG  +  L R+ILTASGG FRD  +E L +V   DAL+HPNW MG KIT+DSA
Sbjct:    3 KRIAILGSTGSIGRQTLEVVDRSEGRLTVQALAAGSNWKELLAQIEIYRPRLAAMMETEAAERLAEALWERGLPIPVVTGEAGLAEAACLPEVDTVVTAVSGAIGLGPTMAAIEAGKEIALANKETLVAAGPLVMAAARRREVTILPVDSEHSAIFQCLQG-QDRRLARLILTASGGPFRDKSLEALHQVTPEDALRHPNWRMGPKITIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THEP3 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=dxr PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.231e-53
Identity = 107/212 (50.47%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LGSTGSIGTQTLD++    + F +V L A +N+ LL+ Q++ F P+VVAV++E   ++++E   N+++  EIL G +G+ E  ++ DA  VV  + G AGL PTV AI+ GKDIALANKE L+  G  V+ L  K +I +LP DSEHSAI QC++G  +  + R+ILTASGG FR    E L++V V +AL HPNW MGKKIT+DSA
Sbjct:    2 KKVIILGSTGSIGTQTLDVIKNFRENFEIVGLTAYNNVELLSKQIREFNPKVVAVKDEDKANQLRE---NLKKNVEILTGSKGLQEIVKY-DADLVVVAVEGIAGLIPTVTAIQRGKDIALANKEVLVTAGQIVMDLVKKKDITLLPVDSEHSAILQCLRGNDKKEVSRLILTASGGPFRGKKKEDLRKVTVNEALNHPNWKMGKKITIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR1_BACCR (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dxr1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.231e-53
Identity = 101/212 (47.64%), Postives = 147/212 (69.34%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D+++     +    +I  G  G I  A HPD+  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC++G     + ++I+TASGGAFRD   ++++ ++  DALKHPNW MG K+T+DSA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIDLLEQQIKTFQPRIVSVATKDLADKLR---TRISANTKITHGTDGFIAVATHPDSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLKGENNKEIEKLIVTASGGAFRDKTRDEMQTLQAKDALKHPNWLMGAKLTIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PELPB (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=dxr PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.220e-53
Identity = 108/212 (50.94%), Postives = 142/212 (66.98%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +++LGSTGSIG  TLD+V +H +KF++  LA G ++ LLA+Q+K F P  V+VR+   + +++  L +   KPEI  G +G    A       VV+ IVG AGL PTV+AI+AGK IALANKETL+  G  V  L  KHN+ +LP DSEHSAIFQ + G     + RIILTASGG FR+   E+LK V +  ALKHP W+MG KIT+DSA
Sbjct:    2 RSLAILGSTGSIGLSTLDVVRQHPEKFKIAGLAEGHDVALLAEQIKEFLPAAVSVRDADSVKKLQTLLGS--HKPEIFHGLEGAAAIASAEGVDMVVSAIVGAAGLLPTVSAIKAGKHIALANKETLVVAGKLVSDLVKKHNVHLLPVDSEHSAIFQSLAGHRAEDVERIILTASGGPFRNTSAEELKNVTLEQALKHPQWTMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PELLD (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Pelodictyon luteolum (strain DSM 273) GN=dxr PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.220e-53
Identity = 107/212 (50.47%), Postives = 143/212 (67.45%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            + +S+LGSTGSIG  TLD+V +H D+F++V LA G ++ +LA+Q++ F P +V+VR+    + +K  L    + PEI  G +G    A    +  VV+ IVG AGL PTV AI+AGKDIALANKETL+  G  V  L  KHN+++LP DSEHSAIFQ +QG  +  + RIILTASGG FR+     +++     ALKHP WSMG KIT+DSA
Sbjct:    2 RALSILGSTGSIGLSTLDVVRQHPDRFKIVGLAEGHDVNMLAEQIREFNPSIVSVRDAGSAELLKTLLGT--DLPEICHGIEGAGTVAAAEGSDMVVSAIVGAAGLTPTVKAIKAGKDIALANKETLVVAGQLVSDLVKKHNVRLLPVDSEHSAIFQSLQGHRQEDVERIILTASGGPFRNSSFADMEKAGPEQALKHPQWSMGAKITIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR1_BACHK (1-deoxy-D-xylulose 5-phosphate reductoisomerase 1 OS=Bacillus thuringiensis subsp. konkukian GN=dxr1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.220e-53
Identity = 102/212 (48.11%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LGSTGSIGT  LD+V+ H + F++V L A  NI LL  Q+K F+P++V+V  + L D ++     +    +I  G  G+I  A HP++  V++ +VG +GL PT+ A++A KDIA+ANKETL+A G  V  LA ++  +++P DSEHSAIFQC+ G     + ++I+TASGGAFRD   E++K ++  DALKHPNW MG K+T+DSA
Sbjct:    3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKELADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIAIANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEMKTLQAKDALKHPNWLMGAKLTIDSA 211          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR1_BACCZ1.111e-5348.581-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_GEOBB1.450e-5350.941-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEPX2.474e-5350.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_SYMTH2.474e-5350.931-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_HELMI2.474e-5352.831-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THEP33.231e-5350.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACCR3.231e-5347.641-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]
DXR_PELPB4.220e-5350.941-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PELLD4.220e-5350.471-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR1_BACHK4.220e-5348.111-deoxy-D-xylulose 5-phosphate reductoisomerase 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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