FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACSK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacillus clausii (strain KSM-K16) GN=dxr PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51
Identity = 102/212 (48.11%), Postives = 149/212 (70.28%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LGSTGSIGTQTLD++ ++ D+F + ALA G+N+ L  +Q+K F+P++V+V+     ++ +       +  E L GE+G+ E AR+ ++  VVT I G  GL PT++AI+A K +A+ANKETL++ G  V+  A ++++ ++P DSEHSAIFQ + G P+ A+ R+ILTASGG+FRD    +L  V V  AL HPNWSMG K+T+DSA
Sbjct:    2 KQISLLGSTGSIGTQTLDVIRDYPDQFTLSALACGTNLELCRNQIKEFQPKLVSVQRP---EDAQTLAGEFGDSIEFLYGEEGLKEVARYSESDIVVTAITGSIGLLPTLSAIKAKKAVAIANKETLVSAGHLVVSAAKENDVPLIPVDSEHSAIFQALNGEPKKAVDRLILTASGGSFRDKSRAELDGVTVEQALAHPNWSMGAKVTIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOB8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dxr PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.501e-50
Identity = 99/212 (46.70%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG+TGSIG+QTLD++ +   + +++ + A +++  + + ++ FKP  V + +     EIK+      +K ++L G +G+ + A   +   VVT +VG  GL+PT+ AIEA KDIALANKETL+  G  V+  A ++N+KI P DSEHSAIFQC++G     LR+IILTASGG FR   +E L+++KV DALKHP W+MG+KI++DSA
Sbjct:    2 KNISILGATGSIGSQTLDVIRKSNGELKLIGVTANTSVKKVIEIIEEFKPSYVGMMDAVSTHEIKKYCEEHNKKIKVLEGIEGLDKIASLDEIDMVVTSVVGMIGLEPTMKAIEAKKDIALANKETLVVAGEIVMKAAKENNVKIFPVDSEHSAIFQCLRGNDINTLRKIILTASGGPFRGRTLESLEDIKVEDALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOCE (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=dxr PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.960e-50
Identity = 111/212 (52.36%), Postives = 139/212 (65.57%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS++GSTGSIG QTL+  A      +V AL+A SNI LL  QV  FKP VV+V N  L  E+   L       E+L G+ G+     H +A TVVT +VG AGL PT+ AI   K+IALANKETL+  G  V+  A K+N+KI P DSEHSAI+QC+ G  +  + +IILTASGG FR   +++LK +  A ALKHPNWSMG KIT+DSA
Sbjct:    3 KIISIIGSTGSIGRQTLE--AAKNLGIKVAALSANSNIDLLEKQVHEFKPDVVSVGNSELAKEMSNRLQGFGI--EVLWGQDGMKRVVEHSEADTVVTSVVGTAGLIPTIHAIRHKKNIALANKETLVTAGQLVMEDAKKNNVKIFPVDSEHSAIYQCLLGNKDKQVEKIILTASGGPFRGKNIKELKNITPAQALKHPNWSMGNKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACTN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides thetaiotaomicron GN=dxr PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.960e-50
Identity = 103/212 (48.58%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQ L ++ EH D +   AL A + + LL  Q ++F+P+VV + NE    ++KEAL+++  K  + AG   V +         V+T +VG AGLKPT+ AI A K IALANKETL+  G  +  LA +++  ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +E+LK V    ALKHPNW MG KIT+DSA
Sbjct:   10 KQIAILGSTGSIGTQALQVIEEHPDLYEAYALTANNRVELLIAQARKFQPEVVVIANEEKYAQLKEALSDLPIK--VYAGIDAVCQIVEAGPVDMVLTAMVGYAGLKPTINAIRAKKAIALANKETLVVAGELINQLAQQYHTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTLEQLKSVTKTQALKHPNWEMGAKITIDSA 219          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_PARUW (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Protochlamydia amoebophila (strain UWE25) GN=dxr PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.560e-50
Identity = 100/212 (47.17%), Postives = 143/212 (67.45%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIG  TL +    +++ +VVA+AA  NI LL  Q K F P ++AV N +   E+++ L        +LAG +G++ AA + +A  V++ + G  GL+PT+ AI+AGKD+ LANKE L++GG  ++ L  + NI +LP DSEHSAIFQC+ G    +++RIILT+SGG FR W  E+L+ V V  AL HP WSMG K+T+DS+
Sbjct:    2 KHIAILGSTGSIGKNTLQVARHLKERIKVVAIAARENIDLLEAQSKEFCPDIIAVFNNAKAYELQKRLPG----KTVLAGMEGLLAAASYSEADLVISAMTGTMGLQPTIEAIKAGKDVGLANKEALVSGGAIIMKLVKEKNINLLPIDSEHSAIFQCLNGEALKSVQRIILTSSGGPFRTWTQEQLETVTVEQALNHPTWSMGPKVTIDSS 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_EXISA (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dxr PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.560e-50
Identity = 101/212 (47.64%), Postives = 140/212 (66.04%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS++G TGSIG QT D++ +H D F + A A G+N+ +  + + R +P+ V+  +  +L+++K  L     +P    G +G+ E A    A  VVT +VG  GL+PT+AAI+AGKDIALANKETL+  G  V     +H + +LP DSEHSAI+QC+ G     + +IILTASGG+FRD   ++L +V V DAL HPNWSMG KIT+DSA
Sbjct:    2 KRISLIGGTGSIGVQTCDVIEQHPDLFELEAYAFGTNVEVATEWINRLRPKYVSATSIEVLEQLKPRLTY---EPLYFIGPEGLKECATAERADIVVTAVVGAVGLEPTLAAIQAGKDIALANKETLVTAGHLVKAAVKEHGVNLLPVDSEHSAIYQCLNGERREDVSKIILTASGGSFRDRSRDELADVTVEDALNHPNWSMGAKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACFR (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis GN=dxr PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.344e-50
Identity = 102/212 (48.11%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +E+LK V    ALKHPNW MG KIT+DSA
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTMEQLKTVTKVQALKHPNWEMGAKITIDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACFN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dxr PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.344e-50
Identity = 102/212 (48.11%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQ L ++ EH + + V AL A + + LL  Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+T +VG AGLKPT+ AI AGK IALANKETL+  G  +  LA ++   ILP DSEHSA+FQC+ G     + ++ILTASGG FR   +E+LK V    ALKHPNW MG KIT+DSA
Sbjct:    7 KQIAILGSTGSIGTQALQVIEEHPELYEVYALTANNKVDLLIAQARKFMPEAVVIANEEKYAQLKEALSDLPVK--VYAGAAALCQIVESGPIDVVLTAMVGYAGLKPTMNAIRAGKAIALANKETLVVAGELINQLARQYRTPILPVDSEHSAVFQCLAGEVGNPIEKVILTASGGPFRTCTMEQLKTVTKVQALKHPNWEMGAKITIDSA 216          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_DESPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Desulfotalea psychrophila GN=dxr PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.367e-50
Identity = 105/212 (49.53%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG+TGSIGT  L++V +  D++R+VA+AAG NI L A Q++ F P +V+V +E     ++E L     K  IL G  G  E A +P A   ++ IVG AGL PT+AAIEAGKDI LANKETL+  G  V+  A +  + +LP DSEHSAIFQ +       L +IILTASGG F      +L +V  A AL HPNWSMG+K+++DSA
Sbjct:    2 KKISLLGATGSIGTSVLEVVRKFSDQYRIVAMAAGRNIDLFARQIEEFSPDLVSVLDEEYAHCLQERLGGFRGK--ILWGNAGNEEVAAYPSASITISAIVGAAGLLPTLAAIEAGKDIGLANKETLVMAGKIVMERARRKGVALLPVDSEHSAIFQALHAGKRADLAKIILTASGGPFHGRTAAELAQVTPAQALAHPNWSMGRKVSIDSA 211          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_BACV8 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dxr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.703e-50
Identity = 101/212 (47.64%), Postives = 142/212 (66.98%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LGSTGSIGTQ L ++ EH D + V AL A + + LL +Q ++F P+ V + NE    ++KEAL+++  K  + AG   + +         V+  +VG AGL+PT+ AI+AGK IALANKETL+  G  +  LA++++  +LP DSEHSAIFQC++      L ++ILTASGG FR + +E+L+ V  A ALKHPNW MG KIT+DSA
Sbjct:    3 KQIAILGSTGSIGTQALQVIEEHPDLYEVYALTANNRVDLLVEQARKFMPEAVVIANEEKYLQLKEALSDLPVK--VYAGADALSQIVESQPIDIVLASMVGYAGLRPTINAIKAGKAIALANKETLVVAGELINALANQYHTPVLPVDSEHSAIFQCLE--INNRLEKVILTASGGPFRTYTMEQLQTVTKAQALKHPNWEMGAKITIDSA 210          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_BACSK5.158e-5148.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB81.501e-5046.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOCE1.960e-5052.361-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACTN1.960e-5048.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_PARUW2.560e-5047.171-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_EXISA2.560e-5047.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFR3.344e-5048.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACFN3.344e-5048.111-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_DESPS4.367e-5049.531-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_BACV85.703e-5047.641-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

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Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
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