FC876264

Overview
NameFC876264
Unique NameFC876264
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15084 contig Ccv1_Contig15084:326..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ANASK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter sp. (strain K) GN=dxr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.703e-50
Identity = 104/212 (49.06%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G   G +RR+ILTASGG  R  P  +L  V    ALKHPNWSMG KIT+DSA
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVPILPVDSEHSAIHQSLVGHNRGEVRRLILTASGGPLRCTPEAELATVTPERALKHPNWSMGDKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_ANAD2 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=dxr PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.703e-50
Identity = 104/212 (49.06%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K +++LGSTGSIG Q LD+V    D+F VV LAAG N   L +Q++RF+P+VV+V +E+    ++   A      E+L+G+ G +  A HPDA  V+  I G AGL+ T AAIEAGK + LANKE+++  G  ++  A    + ILP DSEHSAI Q + G   G +RR+ILTASGG  R  P  +L  V    ALKHPNWSMG KIT+DSA
Sbjct:    2 KRVAILGSTGSIGVQALDVVGRFPDRFEVVGLAAGRNAPRLLEQIRRFRPRVVSVCDEAAARAVR---AEAPPGTEVLSGDAGAVAVASHPDAAFVLAAISGGAGLRSTAAAIEAGKPVGLANKESMVLAGELLMARAAAKGVAILPVDSEHSAIHQSLVGHNRGEVRRLILTASGGPLRCTPEAELATVTPERALKHPNWSMGDKITIDSA 210          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_THETN (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Thermoanaerobacter tengcongensis GN=dxr PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.449e-50
Identity = 103/212 (48.58%), Postives = 146/212 (68.87%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K + +LGSTGSIG QTLD+V   +++F +V L   +N++LL+ Q+K F+P+VVAV++E    +++E   N++E  E+L G++G+ E  ++ +A  VV  + G AGL PTV AI+ GK+IALANKE L+  G  V+ L  +  I+ LP DSEHSAI QC++G  +  +  +ILTASGG FR    + L  V V +ALKHPNW MGKKIT+DSA
Sbjct:    2 KKLIILGSTGSIGRQTLDVVRSLKEEFEIVGLTGYNNVSLLSKQIKEFRPKVVAVKDEEKARKLRE---NLDEPIEVLTGKEGLKEIVKY-EADMVVVAVEGIAGLIPTVEAIKLGKNIALANKEVLVTAGEIVMGLVKEKKIEFLPVDSEHSAILQCLKGNNKREVSNLILTASGGPFRGKKKKDLVNVTVEEALKHPNWKMGKKITIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOB6 (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=dxr PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.271e-49
Identity = 95/212 (44.81%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++ + +++ ++VA++A  +   + + +K FKP+   +  E+    +++   N +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L ++K   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCVNSKIDTKVLKGMEGMIYISTLEEINTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGRKKEELIDIKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_MACCJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Macrococcus caseolyticus (strain JCSC5402) GN=dxr PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.167e-49
Identity = 96/212 (45.28%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I +LG++GS+GTQ LDI+ ++ D +++V+ + G N+ L    ++ F+P +  V+++  +D+I+ +   V      + G  G++E A +     ++  I+G  GLKPTV AI+ G DIALANKETL+  G  ++ LA ++N+ I+P DSEHSAIFQC+ G     + ++I+TASGG+FR+   E LK+V V DALKHPNWSMGKKIT+DSA
Sbjct:    2 KNIGILGASGSVGTQGLDIIRQYPDTYKLVSFSVGKNLELANKIIEEFRPDICCVQDKEDIDKIQSSSIKV------VYGNDGLMEIAAYVKNDMLLNSIMGSIGLKPTVHAIKHGIDIALANKETLVVAGEIIMQLAREYNVNIIPVDSEHSAIFQCLNGEDHKHIEKLIITASGGSFRELSREALKDVTVQDALKHPNWSMGKKITIDSA 207          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBK (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Okra / Type B1) GN=dxr PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.167e-49
Identity = 96/212 (45.28%), Postives = 145/212 (68.40%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++ + +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L EVK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRKEKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIEVKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_LYSSC (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxr PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.697e-49
Identity = 104/214 (48.60%), Postives = 142/214 (66.36%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI--LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG+TGSIG QT DI+ E  + F++VA ++G N+    + +   KP++V+V+ E      ++AL   +E P I    G QG++E A HP +  +V  ++G  GL+ T+AAI  GK IA+ANKETL+  G  V+  A K+N  ILP DSEHSAIFQ + G     + R+I+TASGG+FRD   ++LK V VADAL HPNWSMG KIT+DSA
Sbjct:    2 KKISLLGATGSIGWQTYDILKEQREAFQLVAFSSGKNMEKTREMIDNLKPELVSVQLE------EDALLLAKEYPTIHFTFGAQGLVEVATHPASTVLVNAVLGSVGLESTLAAIRMGKTIAIANKETLVTAGHLVMAEAKKYNATILPVDSEHSAIFQSMNGENPKDIERLIITASGGSFRDKTRDQLKHVTVADALNHPNWSMGAKITIDSA 209          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOPS (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium perfringens (strain SM101 / Type A) GN=dxr PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.828e-49
Identity = 99/212 (46.70%), Postives = 141/212 (66.51%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K IS+LG TGSIGTQTLD++  H++ F +V + A  NI L  D +K F P+ VA+ +E    ++ + + +   K E++ G +G+++ A   +   VVT +VG  GLKPTV AI  GK+IALANKETL+  G  V+  A ++ +KIL  DSEHSAIFQ +QG     + +I+LTASGG FR + ++ LK V    ALKHP W+MG+KI++DS+
Sbjct:    2 KRISILGVTGSIGTQTLDVLRFHKEDFELVGITANRNIELTMDIIKEFSPKYVAINHEESYKKLVDLVKSEGLKCEVIYGMEGLVKVATLDEIDIVVTSVVGMIGLKPTVEAIRKGKNIALANKETLVVAGELVMREAKENGVKILAVDSEHSAIFQSLQGNAHNKIDKILLTASGGPFRGFTIKDLKSVTPERALKHPKWNMGQKISIDSS 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBL (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=dxr PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49
Identity = 95/212 (44.81%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L +VK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYTVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIDVKPEHALKHPKWNMGRKISIDSA 213          
BLAST of FC876264 vs. ExPASy Swiss-Prot
Match: DXR_CLOBJ (1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=dxr PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49
Identity = 95/212 (44.81%), Postives = 144/212 (67.92%), Query Frame = 1
Query:   88 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSA 723
            K I++LG+TGSIGTQTLD++   +++ ++VA++A  +   + + +K FKP+   +  E+    +++   + +   ++L G +G+I  +   +  TVVT +VG  GL PT+ AIE+GKDIALANKETL+  G  V+  A +HN+ ILP DSEH AIFQC++G  +  ++ II+TASGG FR    E+L +VK   ALKHP W+MG+KI++DSA
Sbjct:    2 KNITILGATGSIGTQTLDVIRREKEELKLVAISANKSYKKVIEIIKEFKPKYAVLMEENAFKIVEDFCIDNKIDTKVLKGMEGMIYISTLEEVNTVVTSVVGMIGLVPTIKAIESGKDIALANKETLVVAGELVISKAKEHNVNILPVDSEHGAIFQCLRGNKKEEVKNIIVTASGGPFRGKKKEELIDVKPEHALKHPKWNMGRKISIDSA 213          
The following BLAST results are available for this feature:
BLAST of FC876264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
DXR_ANASK5.703e-5049.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_ANAD25.703e-5049.061-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_THETN7.449e-5048.581-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOB61.271e-4944.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_MACCJ2.167e-4945.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBK2.167e-4945.281-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_LYSSC3.697e-4948.601-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOPS4.828e-4946.701-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBL6.306e-4944.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]
DXR_CLOBJ6.306e-4944.811-deoxy-D-xylulose 5-phosphate reductoisomerase OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002F01EF DevOvary1 Citrus clementina cDNA clone C32002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876264 ID=FC876264; Name=FC876264; organism=Citrus clementina; type=EST; length=723bp
ATAGTTCAATGTTCTGCTCAGGGACCTCCTCCTGCATGGCCAGGCCGAGC
TGTTACAGAGACTTTTCGTAAGACTTGGGATGGTCCAAAGCCAATCTCAG
TGCTTGGGTCAACTGGTTCTATTGGAACTCAGACGTTGGACATAGTTGCG
GAGCATGAAGATAAATTCAGAGTTGTGGCACTGGCAGCTGGTTCAAATAT
AACTCTTCTTGCTGATCAGGTGAAGAGATTCAAACCTCAAGTAGTTGCTG
TTAGAAATGAGTCATTACTTGATGAAATCAAGGAGGCTTTGGCTAATGTT
GAAGAAAAGCCCGAGATTTTGGCCGGGGAACAGGGAGTCATTGAGGCTGC
CCGACACCCAGATGCTGTCACCGTGGTGACAGGTATAGTCGGTTGTGCAG
GATTAAAGCCTACAGTTGCTGCGATAGAAGCAGGAAAAGATATAGCTTTG
GCCAATAAGGAGACATTGATTGCTGGTGGTCCTTTTGTCCTTCCTCTAGC
TCACAAGCATAACATAAAAATTCTTCCAGCTGATTCAGAACATTCTGCCA
TATTTCAGTGTATTCAAGGCTTGCCTGAGGGTGCACTTCGGCGCATTATT
TTAACTGCATCTGGTGGGGCTTTCAGGGACTGGCCGGTTGAGAAACTGAA
AGAAGTTAAAGTGGCTGATGCATTGAAGCATCCTAACTGGAGTATGGGAA
AAAAGATTACTGTCGATTCTGCT
back to top