FC876268

Overview
NameFC876268
Unique NameFC876268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK9_ARATH (Calcium-dependent protein kinase 9 OS=Arabidopsis thaliana GN=CPK9 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +L    EDV+  Y  G+ELGRGQFGVTYL T   T +++ACKSIS +KL+ + D +D+RRE+QIM HL+G  NIVE KGAYED  +VNL+M+LCAGGELFDRIIAK
Sbjct:   79 ILENAFEDVKLFYTLGKELGRGQFGVTYLCTENSTGKKYACKSISKKKLVTKADKDDMRREIQIMQHLSGQPNIVEFKGAYEDEKAVNLVMELCAGGELFDRIIAK 184          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKF_ARATH (Calcium-dependent protein kinase 15 OS=Arabidopsis thaliana GN=CPK15 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.956e-33
Identity = 62/106 (58.49%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGKP E++R  Y  G+ELGRGQFG+TY      T   +ACKSI  RKL  + D++DV+RE+QIM +L+G  NIVE+KGAYEDR S++L+M+LC G ELFDRIIA+
Sbjct:   90 ILGKPFEEIRKLYTLGKELGRGQFGITYTCKENSTGNTYACKSILKRKLTRKQDIDDVKREIQIMQYLSGQENIVEIKGAYEDRQSIHLVMELCGGSELFDRIIAQ 195          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKT_ARATH (Calcium-dependent protein kinase 29 OS=Arabidopsis thaliana GN=CPK29 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.167e-33
Identity = 65/109 (59.63%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  240 VGRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +G +L +PM D+   Y   +ELGRGQFG+TY  T K   +++ACKSIS RKLI R D+EDVRREV I+ HLTG  NIVE +GAYED+ +++L+M+LC+GGELFDRII K
Sbjct:   70 IGPILNRPMIDLSALYDLHKELGRGQFGITYKCTDKSNGREYACKSISKRKLIRRKDIEDVRREVMILQHLTGQPNIVEFRGAYEDKDNLHLVMELCSGGELFDRIIKK 178          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKB_ORYSJ (Calcium-dependent protein kinase isoform 11 OS=Oryza sativa subsp. japonica GN=CPK11 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.167e-33
Identity = 64/106 (60.38%), Postives = 84/106 (79.25%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            VLG+   D+R  YI GR+LG+GQFG TYL T  +T  ++ACK+I  RKLI ++DVEDVRRE+QIMHHL+GH+N+V +K  YED  +V+++M+LCAGGELFDRI  K
Sbjct:   67 VLGRKTADLREHYIIGRKLGQGQFGTTYLCTEINTGCEYACKTIPKRKLITKEDVEDVRREIQIMHHLSGHKNVVAIKDVYEDGQAVHIVMELCAGGELFDRIQEK 172          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK6_ARATH (Calcium-dependent protein kinase 6 OS=Arabidopsis thaliana GN=CPK6 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.151e-32
Identity = 66/104 (63.46%), Postives = 82/104 (78.85%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRII 560
            VLG    ++R+ Y   R+LG+GQFG TYL T   T   +ACKSIS RKLI+++DVEDVRRE+QIMHHL GH+NIV +KGAYED   V+++M+LCAGGELFDRII
Sbjct:   73 VLGHKTPNIRDLYTLSRKLGQGQFGTTYLCTDIATGVDYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCAGGELFDRII 176          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK5_SOLTU (Calcium-dependent protein kinase 5 OS=Solanum tuberosum GN=CPK5 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.151e-32
Identity = 64/106 (60.38%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            VLG    ++R+ Y  GR+LG+GQFG TYL T   +   +ACKSI+ RKLI+++DVEDVRRE+QIMHHL GH+NIV +KGAYED   V+++M+LC GGELFDRII +
Sbjct:   60 VLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTELSSGIDYACKSIAKRKLISKEDVEDVRREIQIMHHLAGHKNIVSIKGAYEDPLYVHIVMELCGGGELFDRIIQR 165          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKN_ARATH (Calcium-dependent protein kinase 23 OS=Arabidopsis thaliana GN=CPK23 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.349e-32
Identity = 65/106 (61.32%), Postives = 81/106 (76.42%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +LGKP ED+R  Y  GRELGRG  G+TY+     T   +ACKSI  RKLI+    EDV+ E+QIM HL+G  N+VE+KG+YEDRHSV+L+M+LCAGGELFDRIIA+
Sbjct:   57 ILGKPFEDIRKFYSLGRELGRGGLGITYMCKEIGTGNIYACKSILKRKLISELGREDVKTEIQIMQHLSGQPNVVEIKGSYEDRHSVHLVMELCAGGELFDRIIAQ 162          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKK_ARATH (Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.713e-32
Identity = 60/109 (55.05%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  240 VGRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +  VLG+  E++++ Y  GR+LG+GQFG T+L   K T ++FACK+I+ RKL   +DVEDVRRE+QIMHHL+GH N++++ GAYED  +V+++M++CAGGELFDRII +
Sbjct:  119 IDSVLGRKTENLKDIYSVGRKLGQGQFGTTFLCVDKKTGKEFACKTIAKRKLTTPEDVEDVRREIQIMHHLSGHPNVIQIVGAYEDAVAVHVVMEICAGGELFDRIIQR 227          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK2_ARATH (Calcium-dependent protein kinase 2 OS=Arabidopsis thaliana GN=CPK2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.273e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            VL +  E+ +  Y  GR+LG+GQFG T+L   K T  ++ACKSIS RKL+  +DVEDVRRE+QIMHHL GH N++ +KGAYED  +V+L+M+LC+GGELFDRII +
Sbjct:  174 VLQRKTENFKEFYSLGRKLGQGQFGTTFLCLEKGTGNEYACKSISKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDVVAVHLVMELCSGGELFDRIIQR 279          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK1_ARATH (Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.273e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            VL +  E+ +  Y  GR+LG+GQFG T+L   K T ++FACKSI+ RKL+  +DVEDVRRE+QIMHHL GH N++ +KGAYED  +V+L+M+ CAGGELFDRII +
Sbjct:  138 VLQRKTENFKEFYSLGRKLGQGQFGTTFLCVEKTTGKEFACKSIAKRKLLTDEDVEDVRREIQIMHHLAGHPNVISIKGAYEDVVAVHLVMECCAGGELFDRIIQR 243          
The following BLAST results are available for this feature:
BLAST of FC876268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CDPK9_ARATH1.041e-3363.21Calcium-dependent protein kinase 9 OS=Arabidopsis ... [more]
CDPKF_ARATH3.956e-3358.49Calcium-dependent protein kinase 15 OS=Arabidopsis... [more]
CDPKT_ARATH5.167e-3359.63Calcium-dependent protein kinase 29 OS=Arabidopsis... [more]
CDPKB_ORYSJ5.167e-3360.38Calcium-dependent protein kinase isoform 11 OS=Ory... [more]
CDPK6_ARATH1.151e-3263.46Calcium-dependent protein kinase 6 OS=Arabidopsis ... [more]
CDPK5_SOLTU1.151e-3260.38Calcium-dependent protein kinase 5 OS=Solanum tube... [more]
CDPKN_ARATH3.349e-3261.32Calcium-dependent protein kinase 23 OS=Arabidopsis... [more]
CDPKK_ARATH5.713e-3255.05Calcium-dependent protein kinase 20 OS=Arabidopsis... [more]
CDPK2_ARATH1.273e-3158.49Calcium-dependent protein kinase 2 OS=Arabidopsis ... [more]
CDPK1_ARATH1.273e-3158.49Calcium-dependent protein kinase 1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F06EF DevOvary1 Citrus clementina cDNA clone C32002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876268 ID=FC876268; Name=FC876268; organism=Citrus clementina; type=EST; length=568bp
GGACGCCCAAAACGGAACTCAAGCTAATTGCATTGACTCGCATTTGTCTT
CCTTGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAACTGTAACGGCCT
ACCCTCGTCTCAAACTCAACTCCACTCAACCACCGCCGATCCCGACACTG
GGCCCGGTCACCACCCCAACGGCCTCAAAATAGATCCTCCGGGTCCTCCT
CGTCCTTCTTCCTCTGCCACGTCAGCCACCTCAGGATCCGTTGGCCGCGT
CCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACATCTTCGGCCGCG
AGCTCGGCCGCGGCCAGTTCGGCGTCACCTACTTAGTAACTCACAAAGAC
ACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGCAAGCTCATAAA
CCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGATCATGCACCACC
TAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGTATGAGGACAGG
CACTCTGTGAATTTGATTATGGATTTGTGTGCGGGAGGGGAGTTGTTTGA
TCGGATCATAGCCAAGGG
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