FC876268

Overview
NameFC876268
Unique NameFC876268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK_SOYBN (Calcium-dependent protein kinase SK5 OS=Glycine max PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.115e-27
Identity = 56/106 (52.83%), Postives = 79/106 (74.53%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            VL +  +++R  Y  GR+LG+GQFG T+  T + +  +FACKSI  RKL+ ++D EDV RE+QIMHHL+ H N+V ++G YED  +V+L+M+LC GGELFDRI+ K
Sbjct:   22 VLPQRTQNIREVYEVGRKLGQGQFGTTFECTRRASGGKFACKSIPKRKLLCKEDYEDVWREIQIMHHLSEHANVVRIEGTYEDSTAVHLVMELCEGGELFDRIVQK 127          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK1_ORYSJ (Calcium-dependent protein kinase isoform 1 OS=Oryza sativa subsp. japonica GN=SPK PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.237e-27
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRI 557
            VLG    +VR  Y  GRELG+GQFG TYL T   T  Q+ACK+I    L    D+EDVRRE+QIMHHL+G +NIV +K  YED  +V+++M+LCAGGELF +I
Sbjct:   61 VLGYKTPNVRELYTLGRELGQGQFGKTYLCTEISTGCQYACKTILKSNLRCVSDIEDVRREIQIMHHLSGQKNIVTIKDTYEDEQAVHIVMELCAGGELFSKI 163          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK8_ARATH (Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana GN=CPK8 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.533e-27
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  270 DVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            D+   Y  GRE+GRG+FG+TYL T   T +++ACKSIS +KL    D+EDVRREV+IM H+  H NIV LK A+ED  +V+++M+LC GGELFDRI+A+
Sbjct:   52 DISLMYDLGREVGRGEFGITYLCTDIKTGEKYACKSISKKKLRTAVDIEDVRREVEIMKHMPRHPNIVSLKDAFEDDDAVHIVMELCEGGELFDRIVAR 150          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKE_ARATH (Calcium-dependent protein kinase 14 OS=Arabidopsis thaliana GN=CPK14 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.439e-27
Identity = 72/168 (42.86%), Postives = 93/168 (55.36%), Query Frame = 3
Query:   81 MGNCNGLPSSQTQLHSTTADPDTGP-----GHHPNGLKIDXXXXXXXXXXXXXXXXXXVGRVLGKPM-EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            MGNC G   S  Q           P     G+H +GLK+                      VL +P   +++  Y  GRELGRG+FGVTYL T  +T + FACKSI  +KL    D+EDV+REV+IM  +  H NIV LK  YED  +V+L+M+LC GGELFDRI+A+
Sbjct:    1 MGNCCGTAGSLIQDKQKKGFKLPNPFSNEYGNHHDGLKLI---------------------VLKEPTGHEIKQKYKLGRELGRGEFGVTYLCTEIETGEIFACKSILKKKLKTSIDIEDVKREVEIMRQMPEHPNIVTLKETYEDDKAVHLVMELCEGGELFDRIVAR 147          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKP_ARATH (Calcium-dependent protein kinase 25 OS=Arabidopsis thaliana GN=CPK25 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.610e-26
Identity = 52/98 (53.06%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  273 VRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            ++  Y  G +LG GQFG T++   K T +++ACKSI  RKL N +DVEDVRRE++IM HL G  N++ +KGAYED  +V+++M+LC GGELFDRI+ +
Sbjct:  128 LKEYYNLGSKLGHGQFGTTFVCVEKGTGEEYACKSIPKRKLENEEDVEDVRREIEIMKHLLGQPNVISIKGAYEDSVAVHMVMELCRGGELFDRIVER 225          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKD_ARATH (Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana GN=CPK13 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.044e-25
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 3
Query:  261 PMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            P E++ + Y+  RELGRG+FGVTYL   + ++   ACKSIS RKL    D+EDV+REV IM HL    +IV LK A ED ++V+L+M+LC GGELFDRI+A+
Sbjct:   46 PKENIEDRYLLDRELGRGEFGVTYLCIERSSRDLLACKSISKRKLRTAVDIEDVKREVAIMKHLPKSSSIVTLKEACEDDNAVHLVMELCEGGELFDRIVAR 147          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKR_ARATH (Calcium-dependent protein kinase 27 OS=Arabidopsis thaliana GN=CPK27 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 5.179e-25
Identity = 53/105 (50.48%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIA 563
            +L KP+ D+   YI G ELGRG FG+T     K T + FACK+I   KL + +  EDV+RE++IM  L+G  NIVE K AYED+ SV+++M+ C GGEL+D+I+A
Sbjct:   16 ILEKPLVDITKIYILGEELGRGNFGLTRKCVEKSTGKTFACKTILKTKLKDEECEEDVKREIRIMKQLSGEPNIVEFKNAYEDKDSVHIVMEYCGGGELYDKILA 120          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKO_ARATH (Calcium-dependent protein kinase 24 OS=Arabidopsis thaliana GN=CPK24 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.507e-24
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  246 RVLGKPMED-VRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            RVL +P+ D +   Y  G+ELGRG+FGVT+      T+++FACK IS  KL    DVEDVRREV+IM  L  H NIV  K A+ED+ +V L+M++C GGELFDRI+++
Sbjct:   52 RVLPEPIGDGIHLKYDLGKELGRGEFGVTHECIEISTRERFACKRISKEKLRTEIDVEDVRREVEIMRCLPKHPNIVSFKEAFEDKDAVYLVMEICEGGELFDRIVSR 159          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKV_ARATH (Calcium-dependent protein kinase 31 OS=Arabidopsis thaliana GN=CPK31 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.384e-24
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 3
Query:  249 VLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIA 563
            +L KP  D+   YI G ELG+GQFG+T     K + + +ACK+I    L +R+D E V+RE++IM HL+G  NIVE K AYEDR SV+++M+ C GGELF +I A
Sbjct:   16 ILEKPFVDIGKVYILGDELGQGQFGITRKCVEKTSGKTYACKTILKTNLKSREDEEAVKREIRIMKHLSGEPNIVEFKKAYEDRDSVHIVMEYCGGGELFKKIEA 120          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKG_ARATH (Calcium-dependent protein kinase 16 OS=Arabidopsis thaliana GN=CPK16 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.011e-20
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +D  + Y  G+ LG GQFG TY+ T K T  + A K I   K+     VEDV+REV+I+  LTGH N+V    A+ED++SV ++M+LC GGEL DRI+A+
Sbjct:  102 KDFDHRYTIGKLLGHGQFGYTYVATDKKTGDRVAVKKIDKAKMTIPIAVEDVKREVKILQALTGHENVVRFYNAFEDKNSVYIVMELCEGGELLDRILAR 201          
The following BLAST results are available for this feature:
BLAST of FC876268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CDPK_SOYBN1.115e-2752.83Calcium-dependent protein kinase SK5 OS=Glycine ma... [more]
CDPK1_ORYSJ4.237e-2756.31Calcium-dependent protein kinase isoform 1 OS=Oryz... [more]
CDPK8_ARATH5.533e-2756.57Calcium-dependent protein kinase 8 OS=Arabidopsis ... [more]
CDPKE_ARATH9.439e-2742.86Calcium-dependent protein kinase 14 OS=Arabidopsis... [more]
CDPKP_ARATH1.610e-2653.06Calcium-dependent protein kinase 25 OS=Arabidopsis... [more]
CDPKD_ARATH1.044e-2554.90Calcium-dependent protein kinase 13 OS=Arabidopsis... [more]
CDPKR_ARATH5.179e-2550.48Calcium-dependent protein kinase 27 OS=Arabidopsis... [more]
CDPKO_ARATH1.507e-2452.78Calcium-dependent protein kinase 24 OS=Arabidopsis... [more]
CDPKV_ARATH4.384e-2450.48Calcium-dependent protein kinase 31 OS=Arabidopsis... [more]
CDPKG_ARATH1.011e-2048.00Calcium-dependent protein kinase 16 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32002F06EF DevOvary1 Citrus clementina cDNA clone C32002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876268 ID=FC876268; Name=FC876268; organism=Citrus clementina; type=EST; length=568bp
GGACGCCCAAAACGGAACTCAAGCTAATTGCATTGACTCGCATTTGTCTT
CCTTGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAACTGTAACGGCCT
ACCCTCGTCTCAAACTCAACTCCACTCAACCACCGCCGATCCCGACACTG
GGCCCGGTCACCACCCCAACGGCCTCAAAATAGATCCTCCGGGTCCTCCT
CGTCCTTCTTCCTCTGCCACGTCAGCCACCTCAGGATCCGTTGGCCGCGT
CCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACATCTTCGGCCGCG
AGCTCGGCCGCGGCCAGTTCGGCGTCACCTACTTAGTAACTCACAAAGAC
ACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGCAAGCTCATAAA
CCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGATCATGCACCACC
TAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGTATGAGGACAGG
CACTCTGTGAATTTGATTATGGATTTGTGTGCGGGAGGGGAGTTGTTTGA
TCGGATCATAGCCAAGGG
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