FC876268

Overview
NameFC876268
Unique NameFC876268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKI_ARATH (Calcium-dependent protein kinase 18 OS=Arabidopsis thaliana GN=CPK18 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.252e-19
Identity = 45/100 (45.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +D  N Y  G+ LG GQFG TY+ T  +   + A K I   K+    +VEDV+REV+I+  L GH N+V    A+ED+  + ++M+LC GGEL DRI+AK
Sbjct:   65 KDFDNRYTIGKLLGHGQFGFTYVATDNNNGNRVAVKRIDKAKMTQPIEVEDVKREVKILQALGGHENVVGFHNAFEDKTYIYIVMELCDGGELLDRILAK 164          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPKS_ARATH (Calcium-dependent protein kinase 28 OS=Arabidopsis thaliana GN=CPK28 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.546e-19
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +D  + Y  G+ LG GQFG TY+  H+    + A K +   K++    VEDV+REVQI+  L+GH N+V+   A+ED   V ++M+LC GGEL DRI++K
Sbjct:   56 KDFHDHYTIGKLLGHGQFGYTYVAIHRPNGDRVAVKRLDKSKMVLPIAVEDVKREVQILIALSGHENVVQFHNAFEDDDYVYIVMELCEGGELLDRILSK 155          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CAMK1_ORYSJ (Calcium/calmodulin-dependent serine/threonine-protein kinase 1 OS=Oryza sativa subsp. japonica GN=CAMK1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.156e-16
Identity = 45/97 (46.39%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  285 YIFGRELGRGQFGVTYLVTHKDTK---QQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            Y  GRE+GRG FG T   T K  +      A K I   K+     +EDVRREV+I+  L GH N+V+   AYED  +V ++M+LC GGEL DRI+A+
Sbjct:  147 YELGREVGRGHFGYTCAATCKKGELKGDDVAVKVIPKAKMTTAIAIEDVRREVRILSSLAGHSNLVQFYDAYEDEENVYIVMELCKGGELLDRILAR 243          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CRK_DAUCA (CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.720e-15
Identity = 42/94 (44.68%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  294 GRELGRGQFGVTYLVTHKDTK---QQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            G E+GRG FG T     K  +   Q  A K I   K+     +EDVRREV+I+  LTGH N+V+   A+ED  +V ++M+LC GGEL DRI+++
Sbjct:  151 GEEVGRGHFGYTCRAKFKKGEFKGQDVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAFEDHTNVYVVMELCEGGELLDRILSR 244          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: PEPK2_ARATH (Serine/threonine-protein kinase PEPKR2 OS=Arabidopsis thaliana GN=PEPKR2 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 3
Query:  273 VRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRII 560
            + + Y+FGR +G+G+FG   +   +    +FACK++   +       E V REV+IM HL+GH  +V L   YE+    +L+M+LC+GG L D+++
Sbjct:  103 IDDDYVFGRNIGKGKFGSVRICKSRKNGTEFACKTLKKGE-------ETVHREVEIMQHLSGHPRVVTLHAVYEESDCFHLVMELCSGGRLIDQMV 191          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: MYLKB_DICDI (Probable myosin light chain kinase DDB_G0271550 OS=Dictyostelium discoideum GN=DDB_G0271550 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  240 VGRVLGKPMEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +GR     +ED    Y FG E+GRG F +    THKDT  Q A K+I S++ ++  D++   RE++IM  L  H+NI++L   ++    + L+++L  GGELFD+I+ K
Sbjct:    8 IGRKKDSKIEDF---YEFGPEIGRGAFSIVRQGTHKDTGDQVAIKAI-SKQHVSEADMKRFTREIEIMKKLK-HKNIIQLIEVFDSNDYLYLVLELIRGGELFDKIVEK 111          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: MYLKA_DICDI (Myosin light chain kinase A OS=Dictyostelium discoideum GN=mlkA PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.666e-13
Identity = 40/101 (39.60%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  264 MEDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            M +V   Y F  ELGRG F + YL  +K TKQ++A K I+  +L  +D  ++++ EV I+  +  H NI+ LK  ++    + L+M+L  GGELFD+I+ K
Sbjct:    1 MTEVEKIYEFKEELGRGAFSIVYLGENKQTKQRYAIKVINKSEL-GKDYEKNLKMEVDILKKV-NHPNIIALKELFDTPEKLYLVMELVTGGELFDKIVEK 99          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK3_PLAYO (Calcium-dependent protein kinase 3 OS=Plasmodium yoelii yoelii GN=CPK3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.323e-12
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  303 LGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            LG+G +G  Y  T K  K Q A K +S +KL N   +   R+E+ IM +L  H N+++L   +ED   + LIMDLC GGELFD+II K
Sbjct:  118 LGKGTYGCVYKATDKLLKIQRAVKVVSKKKLKN---IPRFRQEIDIMKNLD-HPNVIKLLETFEDEEQIYLIMDLCTGGELFDKIIKK 201          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: MYLKG_DICDI (Probable myosin light chain kinase DDB_G0275057 OS=Dictyostelium discoideum GN=DDB_G0275057 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  270 DVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +V + Y+ G+ELGRG F V    T K T  + A K I  +K + +  +E +RRE+ IM  +  H N++ LK  +E    + L+M+L  GGELF +I+ +
Sbjct:   51 NVEDFYVVGKELGRGAFSVVREGTRKTTSDKVALKYIE-KKFVKKKHIEQLRREIDIMKKVK-HENVLSLKEIFESDSHLTLVMELVTGGELFYKIVER 147          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: DAPK1_MOUSE (Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSI------SSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            E+V + Y  G ELG GQF V      K T  Q+A K I      SSR+ ++R+D+E   REV I+  +  H N++ L   YE++  V LI++L AGGELFD +  K
Sbjct:    7 ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIE---REVSILKEIR-HPNVITLHEVYENKTDVILILELVAGGELFDFLAEK 108          
The following BLAST results are available for this feature:
BLAST of FC876268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CDPKI_ARATH3.252e-1945.00Calcium-dependent protein kinase 18 OS=Arabidopsis... [more]
CDPKS_ARATH5.546e-1944.00Calcium-dependent protein kinase 28 OS=Arabidopsis... [more]
CAMK1_ORYSJ1.156e-1646.39Calcium/calmodulin-dependent serine/threonine-prot... [more]
CRK_DAUCA3.720e-1544.68CDPK-related protein kinase OS=Daucus carota GN=CR... [more]
PEPK2_ARATH1.846e-1436.46Serine/threonine-protein kinase PEPKR2 OS=Arabidop... [more]
MYLKB_DICDI2.666e-1338.53Probable myosin light chain kinase DDB_G0271550 OS... [more]
MYLKA_DICDI2.666e-1339.60Myosin light chain kinase A OS=Dictyostelium disco... [more]
CDPK3_PLAYO1.323e-1245.45Calcium-dependent protein kinase 3 OS=Plasmodium y... [more]
MYLKG_DICDI5.028e-1237.37Probable myosin light chain kinase DDB_G0275057 OS... [more]
DAPK1_MOUSE1.463e-1141.51Death-associated protein kinase 1 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F06EF DevOvary1 Citrus clementina cDNA clone C32002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876268 ID=FC876268; Name=FC876268; organism=Citrus clementina; type=EST; length=568bp
GGACGCCCAAAACGGAACTCAAGCTAATTGCATTGACTCGCATTTGTCTT
CCTTGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAACTGTAACGGCCT
ACCCTCGTCTCAAACTCAACTCCACTCAACCACCGCCGATCCCGACACTG
GGCCCGGTCACCACCCCAACGGCCTCAAAATAGATCCTCCGGGTCCTCCT
CGTCCTTCTTCCTCTGCCACGTCAGCCACCTCAGGATCCGTTGGCCGCGT
CCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACATCTTCGGCCGCG
AGCTCGGCCGCGGCCAGTTCGGCGTCACCTACTTAGTAACTCACAAAGAC
ACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGCAAGCTCATAAA
CCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGATCATGCACCACC
TAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGTATGAGGACAGG
CACTCTGTGAATTTGATTATGGATTTGTGTGCGGGAGGGGAGTTGTTTGA
TCGGATCATAGCCAAGGG
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