FC876268

Overview
NameFC876268
Unique NameFC876268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length568
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10323 contig Ccv1_Contig10323:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: DAPK1_HUMAN (Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSI------SSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            E+V + Y  G ELG GQF V      K T  Q+A K I      SSR+ ++R+D+E   REV I+  +  H N++ L   YE++  V LI++L AGGELFD +  K
Sbjct:    7 ENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIE---REVSILKEIQ-HPNVITLHEVYENKTDVILILELVAGGELFDFLAEK 108          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: CDPK3_PLAF7 (Calcium-dependent protein kinase 3 OS=Plasmodium falciparum (isolate 3D7) GN=CPK3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.911e-11
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 3
Query:  303 LGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            LG+G +G  Y  T K  K   A K +S +KL N   +   R+E+ IM +L  H N+V+L   +ED + + L+M+LC GGELFD+I+ K
Sbjct:  124 LGKGTYGCVYKATDKLLKISRAVKVVSKKKLKN---IPRFRQEIDIMKNLD-HPNVVKLLETFEDSNQIYLVMELCTGGELFDKIVKK 207          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: MYLKC_DICDI (Probable myosin light chain kinase DDB_G0282429 OS=Dictyostelium discoideum GN=DDB_G0282429 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  273 VRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKLINRDDVEDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            +R  YI G E+GRG F +    T + T  + A KSI++R + N+     + RE++IM  +  H NI++L   YE    ++L+++L  GGELFD+I+ +
Sbjct:   34 LRLNYILGNEIGRGAFSIVREATSRATGTKVAIKSINTRFIKNKL----LMREIEIMKKVGDHPNILKLYEVYETTKHLHLVLELVTGGELFDKIVQR 127          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: DAPK3_RAT (Death-associated protein kinase 3 OS=Rattus norvegicus GN=Dapk3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKL-INRDDV--EDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            EDV + Y  G ELG GQF +      K T  ++A K I  R+L  +R  V  E++ REV I+  +  H NI+ L   +E++  V LI++L +GGELFD +  K
Sbjct:    7 EDVEDHYEMGEELGSGQFAIVRKCQQKGTGMEYAAKFIKKRRLPSSRRGVSREEIEREVSILREIR-HPNIITLHDVFENKTDVVLILELVSGGELFDFLAEK 108          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: DAPK3_MOUSE (Death-associated protein kinase 3 OS=Mus musculus GN=Dapk3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 41/103 (39.81%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKL-INRDDV--EDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            EDV + Y  G ELG GQF +      K T  ++A K I  R+L  +R  V  E++ REV I+  +  H NI+ L   +E++  V LI++L +GGELFD +  K
Sbjct:    7 EDVEDHYEMGEELGSGQFAIVRKCQQKGTGMEYAAKFIKKRRLPSSRRGVSREEIEREVSILREIR-HPNIITLHDVFENKTDVVLILELVSGGELFDFLAEK 108          
BLAST of FC876268 vs. ExPASy Swiss-Prot
Match: DAPK3_HUMAN (Death-associated protein kinase 3 OS=Homo sapiens GN=DAPK3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.495e-11
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3
Query:  267 EDVRNTYIFGRELGRGQFGVTYLVTHKDTKQQFACKSISSRKL-INRDDV--EDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMDLCAGGELFDRIIAK 566
            EDV + Y  G ELG GQF +      K T +++A K I  R+L  +R  V  E++ REV I+  +  H NI+ L   +E++  V LI++L +GGELFD +  K
Sbjct:    7 EDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIR-HPNIITLHDIFENKTDVVLILELVSGGELFDFLAEK 108          
The following BLAST results are available for this feature:
BLAST of FC876268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
DAPK1_HUMAN1.463e-1141.51Death-associated protein kinase 1 OS=Homo sapiens ... [more]
CDPK3_PLAF71.911e-1142.05Calcium-dependent protein kinase 3 OS=Plasmodium f... [more]
MYLKC_DICDI2.495e-1136.73Probable myosin light chain kinase DDB_G0282429 OS... [more]
DAPK3_RAT2.495e-1139.81Death-associated protein kinase 3 OS=Rattus norveg... [more]
DAPK3_MOUSE2.495e-1139.81Death-associated protein kinase 3 OS=Mus musculus ... [more]
DAPK3_HUMAN2.495e-1139.81Death-associated protein kinase 3 OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC32002F06EF DevOvary1 Citrus clementina cDNA clone C32002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876268 ID=FC876268; Name=FC876268; organism=Citrus clementina; type=EST; length=568bp
GGACGCCCAAAACGGAACTCAAGCTAATTGCATTGACTCGCATTTGTCTT
CCTTGTCTCTCTTGACTCGTGTTGACCAAAATGGGCAACTGTAACGGCCT
ACCCTCGTCTCAAACTCAACTCCACTCAACCACCGCCGATCCCGACACTG
GGCCCGGTCACCACCCCAACGGCCTCAAAATAGATCCTCCGGGTCCTCCT
CGTCCTTCTTCCTCTGCCACGTCAGCCACCTCAGGATCCGTTGGCCGCGT
CCTCGGCAAACCCATGGAGGACGTCCGCAACACCTACATCTTCGGCCGCG
AGCTCGGCCGCGGCCAGTTCGGCGTCACCTACTTAGTAACTCACAAAGAC
ACCAAACAACAATTCGCCTGCAAATCCATCTCCTCTCGCAAGCTCATAAA
CCGCGACGACGTCGAAGACGTCCGCCGTGAGGTCCAGATCATGCACCACC
TAACCGGGCACAGGAATATTGTGGAGCTGAAGGGGGCGTATGAGGACAGG
CACTCTGTGAATTTGATTATGGATTTGTGTGCGGGAGGGGAGTTGTTTGA
TCGGATCATAGCCAAGGG
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