FC876270

Overview
NameFC876270
Unique NameFC876270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13662 contig Ccv1_Contig13662:47..476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_HUMAN (Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 SV=4)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+ +     P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_PIG (Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCIEELPEWNFDGSSTFQSEGSNSDMYLVPAAMFRDPFRKDPNKLVFCEVFKYNRKPAETNLRHTCKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 42/97 (43.30%), Postives = 63/97 (64.95%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFR+  N LV+C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRKDPNKLVLCEVFKYNRKPAETNLRHICKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_RAT (Glutamine synthetase OS=Rattus norvegicus GN=Glul PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +KI   YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L+P A+F+DPFRR  N LV C+ +    +P  TN RH+  +I
Sbjct:   24 EKIQLMYIWVDGTGEGLRCKTRTLDCDPKCVEELPEWNFDGSSTFQSEGSNSDMYLHPVAMFRDPFRRDPNKLVFCEVFKYNRKPAETNLRHSCKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_CAEEL (Probable glutamine synthetase OS=Caenorhabditis elegans GN=gln-2 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  139 KIIAEYIWIGGSGMDMRSKART---LPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            KI A Y+WI G+G ++RSK RT   LP  + D    P WNYDGSSTGQA G DS+  L P A + DPF  G N LVMCD      +P  T+ R A A+I
Sbjct:   29 KIQATYVWIDGTGENLRSKTRTFDKLPKRIED---YPIWNYDGSSTGQAKGRDSDRYLRPVAAYPDPFLGGGNKLVMCDTLDHQMQPTATSHRQACAEI 124          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_MACFA (Glutamine synthetase OS=Macaca fascicularis GN=GLUL PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 3.049e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGE-PIPTNKRHAAAKI 426
            +K+ A YIWI G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV+C+++    E P  TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEWNFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCESFQVQFEGPAETNLRHTCKRI 121          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_CHICK (Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.049e-18
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIWI G+G  +R K RTL         LP+WN+DGSST QA G +S++ L P A+F+DPFR+  N LV+C+ +    +   TN RH   +I
Sbjct:   24 EKVQAMYIWIDGTGEHLRCKTRTLDHEPKSLEDLPEWNFDGSSTFQAEGSNSDMYLRPAAMFRDPFRKDPNKLVLCEVFKYNRQSADTNLRHTCRRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_ACOCA (Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 3.982e-18
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+ G +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH+  +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSEGSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNRKPAETNLRHSCKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_CRIGR (Glutamine synthetase OS=Cricetulus griseus GN=GLUL PE=2 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 2.581e-17
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+ A YIW+ G+G  +R K RTL        +LP+WN+DGSST Q+   +S++ L P A+F+DPFR+  N LV C+ +    +P  TN RH   +I
Sbjct:   24 EKVQAMYIWVDGTGEGLRCKTRTLDCEPKCVEELPEWNFDGSSTFQSESSNSDMYLSPVAMFRDPFRKEPNKLVFCEVFKYNQKPAETNLRHTCKRI 120          
BLAST of FC876270 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.304e-16
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 1
Query:  136 DKIIAEYIWIGGSGMDMRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKI 426
            +K+   Y+WI G+G  +R K RTL        ++P+WN+DGSST QA G +S++ L P  +F+DPF    N LVMC+      +   TN RH   KI
Sbjct:   24 EKVQVTYVWIDGTGEGVRCKTRTLDQEPKTIDEIPEWNFDGSSTHQAEGSNSDMYLIPVQMFRDPFCLDPNKLVMCEVLKYNRKSAETNLRHTCKKI 120          
The following BLAST results are available for this feature:
BLAST of FC876270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GLNA_HUMAN8.024e-1944.33Glutamine synthetase OS=Homo sapiens GN=GLUL PE=1 ... [more]
GLNA_PIG1.048e-1844.33Glutamine synthetase OS=Sus scrofa GN=GLUL PE=2 SV... [more]
GLNA_MOUSE1.048e-1843.30Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]
GLNA_RAT1.369e-1844.33Glutamine synthetase OS=Rattus norvegicus GN=Glul ... [more]
GLNA_CAEEL1.788e-1850.51Probable glutamine synthetase OS=Caenorhabditis el... [more]
GLNA_MACFA3.049e-1844.90Glutamine synthetase OS=Macaca fascicularis GN=GLU... [more]
GLNA_CHICK3.049e-1844.33Glutamine synthetase OS=Gallus gallus GN=GLUL PE=2... [more]
GLNA_ACOCA3.982e-1843.30Glutamine synthetase OS=Acomys cahirinus GN=GLUL P... [more]
GLNA_CRIGR2.581e-1742.27Glutamine synthetase OS=Cricetulus griseus GN=GLUL... [more]
GLNA_XENLA8.304e-1641.24Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32002F08EF DevOvary1 Citrus clementina cDNA clone C32002F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876270 ID=FC876270; Name=FC876270; organism=Citrus clementina; type=EST; length=430bp
GAGTGTAGCACATTAACATCCCTTCAATCACAGCAATCTCATTACCAGTT
TCTTTGTTGTGTTAAGAGACTAAAGAGTCTTCGAAACATGTCTCTGCTCT
CAGATCTCCTTAACCTTAACCTCTCAGAATCCACTGACAAGATCATCGCT
GAGTACATATGGATCGGTGGATCTGGCATGGACATGAGGAGCAAAGCAAG
GACTCTTCCCGGTCCCGTTAGTGATCCTTCCAAGCTGCCTAAGTGGAATT
ATGATGGTTCCAGCACAGGCCAAGCACCTGGAGAAGATAGTGAAGTGATC
CTCTATCCTCAAGCTATTTTCAAGGATCCATTCAGGAGAGGCAACAATAT
TCTTGTTATGTGTGATGCTTACACTCCTGCGGGAGAACCAATTCCAACAA
ACAAAAGACATGCAGCTGCCAAGATTTTCA
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