FC876271

Overview
NameFC876271
Unique NameFC876271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 9.320e-45
Identity = 79/109 (72.48%), Postives = 91/109 (83.49%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGRAPCCEK+GLKKG WT EED +L  +IQ +G G+WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN + EEE+ II LH  LGNRWS IA+ +PGRTDNEIKN W+
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWH 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 74/105 (70.48%), Postives = 89/105 (84.76%), Query Frame = 3
Query:  177 PCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            PCC K+G+K+G WT EED+IL  +I+  GEG WRSLPK AGLLRCGKSCRLRW+NYLR  +KRG IT++EE++I++LH  LGNRWSLIA  +PGRTDNEIKNYWN
Sbjct:   16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWN 120          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.114e-43
Identity = 79/110 (71.82%), Postives = 88/110 (80.00%), Query Frame = 3
Query:  162 GMGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            G GRAPCC KVGL +G WT +ED  L  YIQ +G  +WR+LPK AGLLRCGKSCRLRWINYLR DLKRGN T EEEE II+LH  LGN+WS IA+ +PGRTDNEIKN WN
Sbjct:    2 GRGRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWN 111          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.139e-42
Identity = 72/109 (66.06%), Postives = 91/109 (83.49%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR  CC K G+K+G WT++EDD L  Y++A+GEG WR +P+ AGL RCGKSCRLRW+NYLR +++RGNI+ +EE++II+LH  LGNRWSLIA  +PGRTDNEIKNYWN
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWN 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.260e-41
Identity = 75/109 (68.81%), Postives = 87/109 (79.82%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR PCCEKVGL++G WT+EED  L  +I  NG   WR++PK AGLLRCGKSCRLRW NYLR DLKRG  +  EE +I+ LHA+LGNRWS IA+ +PGRTDNEIKNYWN
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWN 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-40
Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR PCC+K+G+KKG WT EED IL  YIQ +G G+WR++P N GLLRC KSCRLRW NYLR  +KRG+ T  EE++II L A LGNRW+ IAS +P RTDN+IKNYWN
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWN 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.376e-40
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 3
Query:  165 MGRAPCCEK-VGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR+PCC++  G+KKG W  EEDD LT YI  NG G+WRSLPK AGL RCGKSCRLRW+NYLR D++RG  +  EE  I++LHA LGN+WS IA ++PGRTDNEIKNYWN
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWN 110          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.103e-40
Identity = 72/109 (66.06%), Postives = 88/109 (80.73%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR PCC+K+G+KKG WTAEED  L  +I  NG+  WR++PK AGL RCGKSCRLRW NYLR DLKRG ++  EE+++I LH+ LGNRWS IA+ +PGRTDNEIKN+WN
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWN 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.642e-39
Identity = 72/109 (66.06%), Postives = 85/109 (77.98%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGR  CC K  L+KG W+ EED+ L  YI  +G G W S+PK AGL RCGKSCRLRWINYLR DLKRG  + +EE +II+LHA+LGNRWS IA+ +PGRTDNEIKN+WN
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWN 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.304e-38
Identity = 74/109 (67.89%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            M R PC EK GLK+G WT EED  LT Y+  NG   WR +PK AGL RCGKSCRLRW+NYLR DLK+G +T  EE  II+LHA LGNRWS IA ++PGRTDNEIKNYWN
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWN 109          
The following BLAST results are available for this feature:
BLAST of FC876271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MYB4_ORYSJ9.320e-4572.48Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB5_ARATH2.296e-4370.48Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB1_MAIZE5.114e-4371.82Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYBC_MAIZE1.139e-4266.06Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB2_PHYPA1.260e-4168.81Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
MYB06_ANTMA1.393e-4066.06Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB39_ARATH2.376e-4067.27Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
ODO1_PETHY3.103e-4066.06Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB86_ARATH7.642e-3966.06Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA1.304e-3867.89Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionC32002F09EF DevOvary1 Citrus clementina cDNA clone C32002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876271 ID=FC876271; Name=FC876271; organism=Citrus clementina; type=EST; length=491bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAAC
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