FC876271

Overview
NameFC876271
Unique NameFC876271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: RAX3_ARATH (Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.636e-36
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGRAPCC+K  +KKG W+ EED  L  YI+ +G G +W +LP+  GL RCGKSCRLRW+NYLR ++K G  + EEE II  L+ ++G+RWS+IA+ +PGRTDN+IKNYWN
Sbjct:    1 MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWN 110          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: RAX1_ARATH (Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 7.908e-36
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGRAPCC+K  +K+G W+ EED  L  YI+  G G +W S P  AGL RCGKSCRLRW+NYLR ++K G+ + EE+ II  L A++G+RWS+IA+++PGRTDN+IKNYWN
Sbjct:    1 MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLRRCGKSCRLRWLNYLRPNIKHGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWN 110          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L +G WT  ED IL  YI  +GEG W +LP  AGL RCGKSCRLRW NYLR  +KRGNI+++EEE+II+LH  LGNRWSLIA  +PGRTDNEIKN+WN
Sbjct:   14 LNRGAWTDHEDKILRDYITTHGEGKWSTLPNQAGLKRCGKSCRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWN 111          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: RAX2_ARATH (Transcription factor RAX2 OS=Arabidopsis thaliana GN=RAX2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.762e-35
Identity = 65/110 (59.09%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEG-SWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            MGRAPCC+K  +K+G W+ EED  L  YI+  G G +W +LP  AGL RCGKSCRLRW+NYLR +++ G+ T EE+ II  L AS+G+RWS+IA+++ GRTDN+IKNYWN
Sbjct:    1 MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWN 110          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.126e-35
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            KKG WT EED IL  Y++A+G+G W  + K  GL RCGKSCRLRW+NYL  ++KRGN T +EE++II+LH  LGNRWSLIA  +PGRTDN++KNYWN
Sbjct:   17 KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWN 113          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 63/98 (64.29%), Postives = 79/98 (80.61%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            +KKG W+ EED  L +Y+ +NG+G W  + KNAGL RCGKSCRLRWINYLR DLKRG  + +EE++II+ H+ LGNRWS IA+ +PGRTDNEIKN+WN
Sbjct:   18 MKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWN 115          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 3
Query:  165 MGRAPC-CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            M + PC  + V ++KG WT EED IL  YI  +GEG W SL ++AGL R GKSCRLRW+NYLR D++RGNIT EE+ +I++LHA  GNRWS IA  +PGRTDNEIKNYW
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYW 109          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 61/98 (62.24%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            LKKG WT+ ED IL  Y++ +GEG+W ++ KN GL RCGKSCRLRW N+LR +LK+G  TAEEE +II+LH+ +GN+W+ +A+++PGRTDNEIKNYWN
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWN 137          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.695e-35
Identity = 61/98 (62.24%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            LKKG WT+ ED IL  Y++ +GEG+W ++ KN GL RCGKSCRLRW N+LR +LK+G  TAEEE +II+LH+ +GN+W+ +A+++PGRTDNEIKNYWN
Sbjct:   40 LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWN 137          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.491e-34
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 3
Query:  165 MGRAPC-CEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            M + PC    V ++KG WT EED IL  +I  +GEG W ++ ++AGL R GKSCRLRW+NYLR D++RGNIT EE+ +I++LHA  GNRWS IA ++PGRTDNEIKNYWN
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWN 110          
The following BLAST results are available for this feature:
BLAST of FC876271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RAX3_ARATH4.636e-3659.09Transcription factor RAX3 OS=Arabidopsis thaliana ... [more]
RAX1_ARATH7.908e-3659.09Transcription factor RAX1 OS=Arabidopsis thaliana ... [more]
TT2_ARATH1.349e-3567.35Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
RAX2_ARATH1.762e-3559.09Transcription factor RAX2 OS=Arabidopsis thaliana ... [more]
WER_ARATH5.126e-3563.92Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB46_ARATH6.695e-3564.29Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB05_ANTMA6.695e-3562.39Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
GAM1_ORYSJ6.695e-3562.24Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI6.695e-3562.24Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB40_ANTMA1.491e-3460.00Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]

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Properties
Property NameValue
Genbank descriptionC32002F09EF DevOvary1 Citrus clementina cDNA clone C32002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876271 ID=FC876271; Name=FC876271; organism=Citrus clementina; type=EST; length=491bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAAC
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