FC876271

Overview
NameFC876271
Unique NameFC876271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.887e-29
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            +KG W+ EED+ L  +I + G   W ++P  AGL R GKSCRLRWINYLR  LKR  I+AEEEE I+  H+SLGN+WS IA  +PGRTDNEIKNYW+
Sbjct:   11 RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWH 107          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.597e-28
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 3
Query:  186 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ G +KG WT +ED +L  ++   G+  W  + K +GL R GKSCRLRW+NYL   LKRG +T +EE ++++LHA  GNRWS IA  +PGRTDNEIKNYW
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYW 103          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 53/96 (55.21%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            +KG WT +ED +L  ++   G+  W  + K +GL R GKSCRLRW+NYL   LKRG +T +EE ++++LHA  GNRWS IA  +PGRTDNEIKNYW
Sbjct:    9 RKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYW 104          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.952e-26
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++KG WT +ED  L   ++  GE  W  + K +GL R GKSCRLRW+NYL   LKRG ++  EE +I++LHA  GNRWS IA  +PGRTDNEIKNYW
Sbjct:    8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYW 104          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.690e-26
Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++KG WT +ED  L   ++  G+  W  + K +GL R GKSCRLRW+NYL   LK G ++ +EE +II+LHA  GNRWS IA  +PGRTDNEIKNYW
Sbjct:    8 MRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYW 104          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.399e-24
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  204 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            K +W  EED IL  Y+   G+ +W  +PK  GL     SCR RW+N+L+  LK+G  T EEE+ +++LHA LGN+WS +A   PGRTDNEIKN+WN
Sbjct:   18 KSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHNPASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWN 113          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB98_ARATH (Transcription factor MYB98 OS=Arabidopsis thaliana GN=MYB98 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 46/104 (44.23%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  186 EKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            +K  L KG+WTAEED +L + ++  G   W  +   A +L  R GK CR RW N+LR D+K+   + EE+ ++I+ H  +GN+W+ IA  +PGRT+N IKN+WN
Sbjct:  211 KKSTLVKGQWTAEEDRVLIQLVEKYGLRKWSHI---AQVLPGRIGKQCRERWHNHLRPDIKKETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWN 311          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB_AVIMB (Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT EED  + +++Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WN
Sbjct:   19 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWN 115          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WN
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWN 181          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBA_HUMAN (Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.312e-19
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T EE+ II + H  LGNRW+ IA  +PGRTDN IKN+WN
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWN 181          
The following BLAST results are available for this feature:
BLAST of FC876271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
LAF1_ARATH1.887e-2960.82Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB48_ARATH1.597e-2853.47Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH6.069e-2855.21Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBA2_ORYSJ1.952e-2655.67Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ9.690e-2654.64Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
MY104_ARATH1.399e-2451.04Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB98_ARATH1.601e-2044.23Transcription factor MYB98 OS=Arabidopsis thaliana... [more]
MYB_AVIMB7.945e-2045.92Transforming protein Myb OS=Avian myeloblastosis v... [more]
MYBA_MOUSE2.312e-1946.94Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]
MYBA_HUMAN2.312e-1946.94Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32002F09EF DevOvary1 Citrus clementina cDNA clone C32002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876271 ID=FC876271; Name=FC876271; organism=Citrus clementina; type=EST; length=491bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAAC
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