FC876271

Overview
NameFC876271
Unique NameFC876271
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBB_HUMAN (Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.957e-18
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT EED  + + ++  G   W  + K+    R GK CR RW N+L  ++K+   T EE+ II + H  LGNRW+ IA  +PGRTDN +KN+WN
Sbjct:   81 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG-RLGKQCRERWHNHLNPEVKKSCWTEEEDRIICEAHKVLGNRWAEIAKMLPGRTDNAVKNHWN 177          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.360e-18
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT EED  + + +   G   W  + K+    R GK CR RW N+L  ++K+ + T EE+  I + H  LGNRW+ IA  +PGRTDN IKN+WN
Sbjct:   87 LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWN 183          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  195 GLKKGRWTAEEDDILTKYIQANGEGSWRSLP-KNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            G+ KG W  EED  L + +   G   W S+  K  G  R GK CR RW N+L  ++++ N T EE++III  HASLGN+W+ I+  + GR  N IKN+WN
Sbjct:  274 GIVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPG--RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWN 371          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.712e-18
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  204 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            KG W+ EED+ L + +   G  +W  + K+    R GKSCRLRW N L   ++    +AEE+E I + HA  GN+W+ IA  + GRTDN +KN+WN
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWN 100          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  156 LRGMGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L+  GR+         KG WT EED+ L   +  +G   W+ +      LR G+ CR RW N L   +KR   T EE+ II+  H+  GN+W+ I+  +PGRT+  IKN+WN
Sbjct:  741 LKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLL-CLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWN 851          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ RW  EED +L  Y++  G   W  + +  N  L R  KSC  RW NYLR  +K+G++T EE+ ++I+L A  GN+W  IA+ +PGRT   +  +W
Sbjct:    3 ERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG WT +EDD + + ++  G   W  +  +    R GK CR RW N+L  ++K+   + EE++II   HA  GN+W+ IA  +PGRTDN IKN+WN
Sbjct:  199 LVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKG-RMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWN 295          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ RW  EED IL  Y++  G   W  + +  N  L R  KSC  RW NYLR  +K+G++T +E+ ++I+L A  GN+W  IA+ +PGRT   +  +W
Sbjct:    8 ERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 105          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ RW+ EED +L  Y++  G   W  + +  N  L R  KSC  RW NYL+  +K+G++T EE+ ++I+L    GN+W  IA+ +PGRT   +  +W
Sbjct:    3 ERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of FC876271 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.645e-15
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWN 491
            L KG W+ EED+ +   ++  G   W ++ ++    R GK CR RW N+L   + +   T EEE  +I+ H   GN+W+ +   +PGR+DN IKN+WN
Sbjct:   85 LVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPG-RIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWN 181          
The following BLAST results are available for this feature:
BLAST of FC876271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
MYBB_HUMAN1.957e-1844.90Myb-related protein B OS=Homo sapiens GN=MYBL2 PE=... [more]
MYB_XENLA4.360e-1844.90Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBQ_DICDI9.712e-1845.00Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYB44_ARATH9.712e-1843.75Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYBAA_DICDI4.820e-1738.39Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
RS2_MAIZE6.295e-1739.80Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYBA_DICDI8.222e-1742.86Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
RS2_ORYSJ3.124e-1639.80Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
AS1_ARATH6.960e-1637.76Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
MB3R1_ARATH2.645e-1537.76Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC32002F09EF DevOvary1 Citrus clementina cDNA clone C32002F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876271 ID=FC876271; Name=FC876271; organism=Citrus clementina; type=EST; length=491bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAAC
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