FC876273

Overview
NameFC876273
Unique NameFC876273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.904e-21
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  156 ERDQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            E +++   A +LA  +VLPM +++  EL + ++I K+GPGA +S S++AAQLPT+N DAP MLDRILRLLASYSV+ C+L    DG G  R YSL  V K+   N
Sbjct:   15 EEEEACLSAMRLASASVLPMVLKSAIELDLLELIKKSGPGAYVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDG-GIERLYSLAPVCKFLTKN 118          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.007e-20
Identity = 57/115 (49.57%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  135 MGSI---VDGERDQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            MGSI   +    D++F  A QLA  +VLPM ++A  EL + +I+ K+GPGA +S S++AAQLPTKN +AP MLDR+ RLLA+YSV+ C+L    DG    R YSL  V K+   N
Sbjct:    1 MGSINQSLTQTEDEAFVFAMQLASASVLPMVLKATVELDLLEIMAKSGPGAFISPSELAAQLPTKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGR-VERLYSLAPVCKFLTKN 114          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_CAPAN (Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  162 DQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            D++F  A QLA  +VLPM +++  EL + +I+ KAGPGA +S S++AAQLPTKN +AP MLDR+LRLLA+YSV+ C+L    DG    R YSL  V K    N
Sbjct:   13 DEAFLFAMQLASASVLPMVLKSALELDLLEIMAKAGPGAAISPSELAAQLPTKNPEAPVMLDRMLRLLATYSVLNCTLRTLPDGR-VERLYSLAPVCKLLTKN 114          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT3_POPKI (Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.243e-20
Identity = 56/103 (54.37%), Postives = 67/103 (65.05%), Query Frame = 3
Query:  162 DQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            D+    A QL   +VLPM ++   EL + +I+ KAGPGA LS SDIA+ LPTKN DAP MLDRILRLLASYS++ CSL    DG    R Y L SV K+   N
Sbjct:   16 DEEANFAMQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHLPTKNPDAPVMLDRILRLLASYSILICSLRDLPDGK-VERLYGLASVCKFLTKN 117          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.527e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  162 DQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            +++   A QLA  +VLPM ++   EL + +I+ KAGPGA LS S+IA+ LPTKN DAP MLDRILRLLASYS++ CSL    DG    R Y L  V K+   N
Sbjct:   17 EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGK-VERLYGLAPVCKFLTKN 118          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.527e-20
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = 3
Query:  162 DQSFACANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            +++   A QLA  +VLPM ++   EL + +I+ KAGPGA LS S+IA+ LPTKN DAP MLDRILRLLASYS++ CSL    DG    R Y L  V K+   N
Sbjct:   17 EEAHLFAMQLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGK-VERLYGLAPVCKFLTKN 118          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.899e-19
Identity = 53/97 (54.64%), Postives = 66/97 (68.04%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            A QLA  +VLPM ++A  EL + +I+ KAGPGA LS  ++AAQLPT+N +AP MLDRI RLLASYSV+ C+L    DG    R Y L  V K+ V N
Sbjct:   24 AMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGK-VERLYGLAPVCKFLVKN 119          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_COFCA (Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.239e-19
Identity = 49/96 (51.04%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSLDG---SGARRRYSLNSVSKYYVPN 458
            A  LA  +VLPM +++  EL + ++I KAGPGA +S S++AAQLPT N +AP MLDRILRLLA+YSV++C L+     G  R Y L  V K+   N
Sbjct:   10 AMSLASASVLPMVLKSAIELDLLELIAKAGPGAYVSPSELAAQLPTHNPEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKN 105          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            A QLA  +VLPM ++A  EL + +I+ KAGPG  LS +DIA+QLPTKN DAP MLDR+LRLLASYS++  SL    DG    R Y L  V K+   N
Sbjct:   23 AMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGK-VERLYGLGPVCKFLTKN 118          
BLAST of FC876273 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 51/97 (52.58%), Postives = 68/97 (70.10%), Query Frame = 3
Query:  180 ANQLAMGTVLPMAMQAVYELGIFQIIDKAGPGAKLSASDIAAQLPTKNKDAPTMLDRILRLLASYSVVECSL----DGSGARRRYSLNSVSKYYVPN 458
            A QLA  +VLPM +++  EL + +II KAGPGA++S  +IA+QLPT N DAP MLDR+LRLLA Y ++ CS+    DG   +R Y L +V+KY V N
Sbjct:   23 AMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGK-VQRLYGLATVAKYLVKN 118          
The following BLAST results are available for this feature:
BLAST of FC876273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
COMT1_CATRO5.904e-2151.43Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT1_CAPCH1.007e-2049.57Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_CAPAN1.315e-2052.43Caffeic acid 3-O-methyltransferase OS=Capsicum ann... [more]
COMT3_POPKI2.243e-2054.37Caffeic acid 3-O-methyltransferase 3 OS=Populus ki... [more]
COMT1_POPTM6.527e-2052.43Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT1_POPKI6.527e-2052.43Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_EUCGU1.899e-1954.64Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_COFCA3.239e-1951.04Caffeic acid 3-O-methyltransferase OS=Coffea canep... [more]
COMT1_PRUDU4.231e-1954.64Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_MEDSA4.231e-1952.58Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002F12EF DevOvary1 Citrus clementina cDNA clone C32002F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876273 ID=FC876273; Name=FC876273; organism=Citrus clementina; type=EST; length=459bp
GGTGATTGGATACTGTAGAAAACACATGGTTGGCATGCTTCTCTTGTTAG
CTTTGAATGAACAAGTCTTTATTTCAAACCCGCTGGCCAAATAAGAAACC
CCTCAAAGCGTAGAAGAAATTCAAGAAACTTAAAATGGGTTCTATAGTTG
ATGGAGAAAGAGACCAAAGCTTTGCATGTGCTAATCAATTGGCGATGGGT
ACAGTGCTACCCATGGCCATGCAAGCGGTGTATGAGCTAGGCATTTTCCA
GATCATAGACAAAGCTGGTCCTGGTGCAAAGCTCTCTGCTTCAGATATTG
CAGCCCAGTTGCCCACCAAGAACAAAGACGCACCCACGATGCTGGATCGG
ATTCTCAGGCTTCTGGCTAGCTACAGTGTTGTTGAGTGCTCACTTGATGG
TTCTGGTGCCCGGAGACGATATAGTTTAAATTCTGTCTCCAAATACTATG
TGCCTAACA
back to top