FC876274

Overview
NameFC876274
Unique NameFC876274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9416 contig Ccv1_Contig9416:17..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 623
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 623
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_STAA8 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 623
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_STAA3 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) GN=odhB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.838e-15
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEG 623
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S EAGV+ E +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_STAHJ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus haemolyticus (strain JCSC1435) GN=odhB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEK 650
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S E GV++E +A EG+TVE G  IA +   GEG  + + S++
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEEGVLQEQLASEGDTVEVGQVIATV---GEGSGNASSSKE 87          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 629
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP AG + E++AKEG+TVE    +  +      VA
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVNALLGAVEAGAASVA 84          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  360 FSSEGGDLVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISK 611
            F S   D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G I EL AKEGE V  G  +  I+K
Sbjct:   67 FYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSGTIVELFAKEGENVTVGNDLYKIAK 149          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_BACSU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bacillus subtilis GN=odhB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 37/94 (39.36%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  381 LVDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVAHVAPSEKYQRK 662
            + +  VP + ESI++GT+A++LK PGD VE  E + ++ETDKV +++ + E+GV++E++   G+TV+ G  I  IS+     +  AP+EK + K
Sbjct:    1 MAEIKVPELAESISEGTIAQWLKQPGDYVEQGEYLLELETDKVNVELTAEESGVLQEVLKDSGDTVQVGEIIGTISEGAGESSAPAPTEKTESK 94          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.843e-13
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 629
            VP +GES+T+ T+ K+ K  G+ V +DEP+ ++ETDKVT++V SP  G + E++AKEG+ VE    +  +     G++
Sbjct:    7 VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDIVEVNAVLGFVESGAAGIS 84          
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_SCHPO (Probable dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC776.15c PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  399 PFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKS 614
            P   ESIT+GTLA++LK PG+ V  DE IA +ETDK+   V +P+AGV+KE + KEG+T+     IAVI  S
Sbjct:   48 PPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQDIAVIDTS 119          
The following BLAST results are available for this feature:
BLAST of FC876274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODO2_STAAM8.838e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC8.838e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA88.838e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAA38.838e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAHJ2.571e-1448.24Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB4.386e-1444.87Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_DICDI1.276e-1348.81Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BACSU1.276e-1339.36Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU2.843e-1341.03Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_SCHPO3.713e-1352.78Probable dihydrolipoyllysine-residue succinyltrans... [more]

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Properties
Property NameValue
Genbank descriptionC32002G01EF DevOvary1 Citrus clementina cDNA clone C32002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876274 ID=FC876274; Name=FC876274; organism=Citrus clementina; type=EST; length=671bp
GATTCAACGTTGTTGTGTTCGTCTGAAGACTCTCTCAAAGAAAACGCAAC
TTGTTCTGTTCGATCAAGCAGGTACATACCTGAACAACGATGCTGGGTGT
TATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCTGCTTCGATTTTAGGGC
ATTCACTGCAGACAATGAGGCCTGCAATGTCTGTATCTAGAGTCTCATCT
ATTGCAGGAAAAGAGACGTTACTGCATTCAAGAGGATTAGGGCATATCCG
GAATTTCAGTCATTTAATTTTTCCAGGTTGCTCTAAGGGTTGTCAACCAT
TAAGGGATGTAATTTCTAGCACCCAGAAAGCAACTAACATGTATCTGTGG
AGCCATCCATTTTCTTCTGAAGGAGGGGATTTGGTTGATGCTGTTGTCCC
TTTTATGGGTGAATCCATAACCGATGGTACTTTGGCAAAATTCTTGAAGG
GTCCTGGTGATAGGGTGGAACTTGATGAACCAATTGCTCAAATTGAAACC
GATAAGGTAACGATTGATGTTGCAAGTCCGGAAGCAGGTGTTATCAAAGA
GCTTGTAGCCAAAGAAGGGGAGACTGTGGAACCAGGTACCAAGATTGCTG
TGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGTAGCTCCCTCAGAAAAA
TACCAGAGAAAGCTGCTCCCT
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