FC876274

Overview
NameFC876274
Unique NameFC876274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9416 contig Ccv1_Contig9416:17..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODB2_BACSU (Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex OS=Bacillus subtilis GN=bfmBB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 3 
Query:  396 VPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 629
            +P +GES+T+GT++K+L  PGD+V   +PIA++ TDKV  +V S   G I ELV +EG+T++ G  I  I   G   A
Sbjct:    8 MPQLGESVTEGTISKWLVAPGDKVNKYDPIAEVMTDKVNAEVPSSFTGTITELVGEEGQTLQVGEMICKIETEGANPA 85
[Close]
BLAST of FC876274 vs. ExPASy Swiss-Prot
Match: ODO2_RICBR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:  384 VDAVVPFMGESITDGTLAKFLKGPGDRVELDEPIAQIETDKVTIDVASPEAGVIKELVAKEGETVEPGTKIAVISKSGEGVA 629
            V  +VP +GES+T+ T+AK+ K  GD V+ DE + +IET+KVT++V SP  G I +++  +G  V  G +I  I++ GE VA
Sbjct:    3 VKIIVPSLGESVTEATIAKWYKKEGDAVKTDELLLEIETEKVTLEVNSPCNGTIGKIIKADGANVAVGEEIGDINE-GEAVA 83
The following BLAST results are available for this feature:
BLAST of FC876274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ODB2_BACSU2.407e-1244.87Lipoamide acyltransferase component of branched-ch... [more]
ODO2_RICBR3.475e-1143.90Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionC32002G01EF DevOvary1 Citrus clementina cDNA clone C32002G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876274 ID=FC876274; Name=FC876274; organism=Citrus clementina; type=EST; length=671bp
GATTCAACGTTGTTGTGTTCGTCTGAAGACTCTCTCAAAGAAAACGCAAC
TTGTTCTGTTCGATCAAGCAGGTACATACCTGAACAACGATGCTGGGTGT
TATACGGAGAAGGGTCGCGAGTGGAGGCTCGCCTGCTTCGATTTTAGGGC
ATTCACTGCAGACAATGAGGCCTGCAATGTCTGTATCTAGAGTCTCATCT
ATTGCAGGAAAAGAGACGTTACTGCATTCAAGAGGATTAGGGCATATCCG
GAATTTCAGTCATTTAATTTTTCCAGGTTGCTCTAAGGGTTGTCAACCAT
TAAGGGATGTAATTTCTAGCACCCAGAAAGCAACTAACATGTATCTGTGG
AGCCATCCATTTTCTTCTGAAGGAGGGGATTTGGTTGATGCTGTTGTCCC
TTTTATGGGTGAATCCATAACCGATGGTACTTTGGCAAAATTCTTGAAGG
GTCCTGGTGATAGGGTGGAACTTGATGAACCAATTGCTCAAATTGAAACC
GATAAGGTAACGATTGATGTTGCAAGTCCGGAAGCAGGTGTTATCAAAGA
GCTTGTAGCCAAAGAAGGGGAGACTGTGGAACCAGGTACCAAGATTGCTG
TGATTTCAAAGTCTGGTGAAGGTGTAGCTCATGTAGCTCCCTCAGAAAAA
TACCAGAGAAAGCTGCTCCCT
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