FC876278

Overview
NameFC876278
Unique NameFC876278
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length492
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig25 contig Ccv1_Contig25:68..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 39/107 (36.45%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  167 DIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 487
            ++F  K V++F LPGA+T  CS+ H+P Y      FK  G+D ++ V+VND +VMN W E  ++++ I F  D +G F + + +         G RS R+S  V++G
Sbjct:   29 ELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSEN-ISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVKNG 134          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRDX5_RAT (Peroxiredoxin-5, mitochondrial OS=Rattus norvegicus GN=Prdx5 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 2
Query:   41 SRAYASVAVGSDMVSAAQDVSLQKARTWDEGVSSNFATTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALL--GPRSERWSAYVEDG 487
            +R+++S AV    +     +   +    + G   N A     ++FK KK V+FG+PGA+T  CS  H+P +       KAKG   V C++VND +V   W    QA+  ++   D  G+F K  DL  D S   L    R +R+S  ++ G
Sbjct:   42 ARSFSSAAVTMAPIKVGDTIPSVEVFEGEPGKKVNLA-----ELFKDKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDAFVTAEWGRAHQAEGKVQLLADPTGAFGKETDLLLDDSLVSLFGNRRLKRFSMVIDKG 187          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PMPA_CANBO (Putative peroxiredoxin-A OS=Candida boidinii GN=PMPA PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 2.924e-14
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  176 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYV 478
            K KK V+  +PGA+T  C+ QH+P Y  N+ +  +KG+D V+ ++ NDP+V+ GW ++L A D   + F  D +    K L    DLSA  LG RS R +  V
Sbjct:   36 KTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVISQNDPFVLKGWKKELGAADAKKLVFVSDPNLKLTKKLGSTIDLSAIGLGTRSGRLALIV 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PMP20_ASPFU (Putative peroxiredoxin pmp20 OS=Aspergillus fumigatus GN=pmp20 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.819e-14
Identity = 41/104 (39.42%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  182 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            KKV++F LPGA+T VCS +HVP Y   + + +AKG+D V  +A ND YVM+ W +  Q   D I F  D D  F KS+    +        R++R++  ++ GK
Sbjct:   46 KKVILFALPGAFTPVCSARHVPEYIEKLPEIRAKGVDVVAVLAYNDAYVMSAWGKANQVTGDDILFLSDPDARFSKSIGWADEEG------RTKRYALVIDHGK 143          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PMPB_CANBO (Putative peroxiredoxin-B OS=Candida boidinii GN=PMPB PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.111e-13
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  176 KGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYV 478
            K KK V+  +PGA+T  C+ QH+P Y  N+ +  +KG+D V+ +  NDP+V+ GW ++L A D   + F  D +    K L    DLS+  LG RS R +  V
Sbjct:   36 KTKKFVVVSVPGAFTPPCTEQHLPGYIKNLPRILSKGVDFVLVITQNDPFVLKGWKKELGAADAKKLIFVSDPNLKLTKKLGSTIDLSSIGLGTRSGRLALIV 138          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PMP20_EMENI (Putative peroxiredoxin pmp20 OS=Emericella nidulans GN=AN8692 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.515e-13
Identity = 39/104 (37.50%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  182 KKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAK-DVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            KKV++F LPGA+T VCS +HVP Y   + + +AKG+D V  +A ND +VM+ W +    K D I F  D +  F KS+    +        R++R++  ++ GK
Sbjct:   46 KKVILFALPGAFTPVCSARHVPEYIERLPEIRAKGVDVVAVLAYNDAFVMSAWGKANGVKNDDILFLSDPEAKFSKSIGWADEEG------RTKRYAIVLDHGK 143          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PMP20_LIPKO (Putative peroxisomal peroxiredoxin OS=Lipomyces kononenkoae PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 2
Query:  173 FKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKD-VIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 487
            F+ K VVI  +PGA+T  C+  H+P +       K+ G+D+VI ++ NDP+V + + + L   D    F  D    F KS  L  DL  A  G R+ R++  V +G
Sbjct:   38 FRDKTVVIVAIPGAFTPTCTANHIPPFVEKFTALKSAGVDAVIVLSANDPFVQSAFGKALGVTDEAFIFASDPGAEFSKSAGLSLDLPPA-FGTRTARYAIIVSNG 142          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: AHP1_YEAST (Peroxiredoxin type-2 OS=Saccharomyces cerevisiae GN=AHP1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  164 KDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKF-KAKGIDSVICVAVNDPYVMNGWAEKLQAKDV--IEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDG 487
            K I + KKV+I G P A++  C+  H+P Y N +D+  K K +D VI V V++P+    WA+ L  KD   I+F  D   +F KS  +G +L+       S RW+  VE+G
Sbjct:   41 KLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKEVDQVIVVTVDNPFANQAWAKSLGVKDTTHIKFASDPGCAFTKS--IGFELAVGDGVYWSGRWAMVVENG 149          
BLAST of FC876278 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 33/113 (29.20%), Postives = 61/113 (53.98%), Query Frame = 2
Query:  152 TTPIKDIFKGKKVVIFGLPGAYTGVCSNQHVPSYKNNIDKFKAKGIDSVICVAVNDPYVMNGWAEKLQAKDVIEFYGDFDGSFHKSLDLGKDLSAALLGPRSERWSAYVEDGK 490
            T  +  +  GKKV++FG+PGA+   CS  HV  +    ++ K+ G+D +IC++ +DP+++   +E    K    F  D  G + + L L  ++    LG RS  ++  +++ K
Sbjct:   26 TVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSENKHVK----FVEDGSGEYIQLLGLELEVKDKGLGVRSRGFALLLDNLK 134          
The following BLAST results are available for this feature:
BLAST of FC876278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PRX5_HAEIN1.005e-1436.45Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]
PRDX5_RAT1.005e-1431.79Peroxiredoxin-5, mitochondrial OS=Rattus norvegicu... [more]
PMPA_CANBO2.924e-1439.81Putative peroxiredoxin-A OS=Candida boidinii GN=PM... [more]
PMP20_ASPFU3.819e-1439.42Putative peroxiredoxin pmp20 OS=Aspergillus fumiga... [more]
PMPB_CANBO1.111e-1338.83Putative peroxiredoxin-B OS=Candida boidinii GN=PM... [more]
PMP20_EMENI5.515e-1337.50Putative peroxiredoxin pmp20 OS=Emericella nidulan... [more]
PMP20_LIPKO1.358e-1134.91Putative peroxisomal peroxiredoxin OS=Lipomyces ko... [more]
AHP1_YEAST3.026e-1137.84Peroxiredoxin type-2 OS=Saccharomyces cerevisiae G... [more]
PRX2A_ARATH8.805e-1129.20Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]

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Properties
Property NameValue
Genbank descriptionC32002G09EF DevOvary1 Citrus clementina cDNA clone C32002G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876278 ID=FC876278; Name=FC876278; organism=Citrus clementina; type=EST; length=492bp
GATAAGGTCAGTGATCGATAGCCTTCGAATCCCCACGTCATCAAGAGCGT
ATGCGTCGGTTGCAGTGGGCAGTGACATGGTCTCTGCCGCGCAGGATGTT
TCTCTCCAGAAAGCTCGGACCTGGGACGAAGGTGTCTCTTCCAATTTCGC
CACCACTCCTATTAAAGACATTTTCAAGGGAAAGAAAGTAGTCATTTTCG
GGCTCCCTGGTGCATATACGGGAGTTTGTTCAAATCAGCATGTCCCTAGT
TACAAGAATAACATTGACAAGTTCAAGGCTAAAGGGATTGATTCTGTAAT
TTGTGTGGCCGTTAATGATCCATACGTTATGAATGGCTGGGCAGAGAAAC
TTCAAGCCAAAGATGTTATTGAATTTTATGGTGACTTTGATGGAAGCTTC
CACAAGAGCTTGGACTTGGGAAAAGATCTTTCTGCTGCTTTGCTTGGTCC
TCGCTCTGAAAGGTGGTCAGCATATGTAGAGGATGGGAAGAT
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