FC876280

Overview
NameFC876280
Unique NameFC876280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length461
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876280 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 5.832e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 2 
Query:  281 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGV 457
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGV 59
[Close]
BLAST of FC876280 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.541e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 2 
Query:  365 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVD 460
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVD
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVD 32
The following BLAST results are available for this feature:
BLAST of FC876280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THS2_ARAHY5.832e-2484.75Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA2.541e-1196.88Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]

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Properties
Property NameValue
Genbank descriptionC32002G12EF DevOvary1 Citrus clementina cDNA clone C32002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876280 ID=FC876280; Name=FC876280; organism=Citrus clementina; type=EST; length=461bp
GAAACTCACCAAGCACGAGCCACAAACATATTCATTAAGGGTTCAACTTG
AAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCGACGGCCCG
GCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGTGTCAACCA
GGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGAGCATATGA
CGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGATGATTAAG
AAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAACCCCAACAT
GTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACATTGTGGTGG
TCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCATCAAAGAA
TGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGCACCACCTC
CGGCGTCGACA
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