FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_PLEBO (Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.897e-14
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1
Query:  199 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            +P+ KVT+ +   G+     VP+D+YIL  AE Q I LP++CR   C++CA +I +G + Q +   +  +    GY L CV YP+SD  + T  E+
Sbjct:    1 MPSFKVTLINETEGLNTTIEVPDDEYILDAAEEQGIDLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.354e-14
Identity = 48/147 (32.65%), Postives = 69/147 (46.94%), Query Frame = 1
Query:   43 SSCCRKPPLHRQLTSSTYNNTRNPSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            S+   K  L  Q T+    N     S+    R + S  L+ +A   G+   ++   K+   D   G   EF V +DQYIL  AE   + LP++CR   C++CA +I SG + Q +   +      KGY L CV YP SD  + T  E
Sbjct:    8 STSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPD---GQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKE 151          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+ VT+ +  + +      P+DQ+IL  AE Q I LP++CR   C++CA ++ SG I Q E   +  +    G+ L CV YP+SD +V+T  ED
Sbjct:    2 TYSVTLVNEEKNINAVIKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAED 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.091e-13
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  238 GVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            G  HEF  P+D YIL  AE+  + LPF+CR   C++CA R+ +G++ Q E   +     ++GY L C+ YP +D  + T  E+
Sbjct:   70 GTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEE 152          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ +   G+     V +D YIL  AE   + LP++CR   C++CA +IKSG + Q +   +  +    GY L CV YP+SD  +ET  E+
Sbjct:    3 TYKVTLINDAEGLNQTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE + I LP++CR   C+SCA ++K G++ Q +   +  E   +G+ L CV +P+SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ +   G+     V +D YIL  AE Q I LP++CR   C++CA ++ SG + Q +   +  +  + G+ L CV YP+SDV +ET  E+
Sbjct:    3 TYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.425e-13
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ +   G+     V +D YIL  AE Q I LP++CR   C++CA ++ SG + Q +   +  +  + G+ L CV YP+SDV +ET  E+
Sbjct:    3 TYKVTLVNAAEGLNTTIDVADDTYILDAAEEQGIDLPYSCRAGACSTCAGKVVSGTVDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   85 SSTYNNTRNPSSLKCRPRKTVSSELQTT---------AGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            +ST +     +SL  + +  V+S L T          AG  G  + ++ T+KVT+  +  G V  F  P+D Y+L  AE + I LP++CR   C+SCA ++ +G + Q +   +  +    G+ L C  YPS+DV +ET  E+
Sbjct:    2 ASTLSTLSVSASLLPKQQPMVASSLPTNMGQALFGLKAGSRGRVT-AMATYKVTLITKESGTV-TFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEE 142          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FERB_ALOMA (Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE + I LP++CR   C+SCA ++K+G + Q +   +  +   +G+ L CV YP+SDV +ET  E+
Sbjct:   16 EFECPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKNGNVDQSDGSFLDDDQIGEGWVLTCVAYPTSDVVIETHKEE 94          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER1_PLEBO4.897e-1437.50Ferredoxin-1 OS=Plectonema boryanum GN=petF1 PE=3 ... [more]
FER3_ARATH8.354e-1432.65Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER_BUMFI1.091e-1338.30Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER6_MAIZE1.091e-1338.55Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_CHLFR1.425e-1338.30Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FERA_ALOMA1.425e-1341.77Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_SYNP61.425e-1338.30Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.425e-1338.30Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_SILPR1.861e-1332.17Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FERB_ALOMA1.861e-1341.77Ferredoxin-B OS=Alocasia macrorrhiza PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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