FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 42/125 (33.60%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  112 PSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            P  +   P  T  S      G  G    ++  +KVT+      V  EF  P+D YIL  AE + I LP++CR   C+SCA ++K+G + Q +   +  +   +G+ L C  YP SDV +ET  E+
Sbjct:   22 PPMMAALPSNTGRSLFGLKTGSRGGRM-TMAAYKVTLVTPTGNV--EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEE 143          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER5_MAIZE (Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE + I LP++CR   C+SCA ++ SG + Q +   +     + G+ L CV YP+SDV +ET  ED
Sbjct:   53 ELQVPDDVYILDYAEEEGIDLPYSCRAGSCSSCAGKVVSGSLDQSDQSFLDDSQVADGWVLTCVAYPTSDVVIETHKED 131          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+  R  G      VPED+YIL  AE Q + LPF+CR   C++CA ++  G++ Q +   +  +   KG+ L CV YP SD ++ T  E+
Sbjct:    3 TYKVTLV-RPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+  R  G      VPED+YIL  AE Q + LPF+CR   C++CA ++  G++ Q +   +  +   KG+ L CV YP SD ++ T  E+
Sbjct:    3 TYKVTLV-RPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 37/94 (39.36%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+  R  G      VPED+YIL  AE Q + LPF+CR   C++CA ++  G++ Q +   +  +   KG+ L CV YP SD ++ T  E+
Sbjct:    3 TYKVTLV-RPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE + I LP++CR   C+SCA ++ SG+I Q +   +  +  + G+ L C  YP SDV +ET  ED
Sbjct:   58 ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKED 136          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE + I LP++CR   C+SCA ++ SG+I Q +   +  +  + G+ L C  YP SDV +ET  ED
Sbjct:   58 ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKED 136          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  265 EDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ED Y+L  AE   + LP++CR   C+SCA ++ SG I Q +   +  E  S+GY L CV YP+SDV +ET  E+
Sbjct:   72 EDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEE 145          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ D   G       P+D YIL  AE   + LP++CR   C++CA ++ +G I Q +   +  +    GY L CV YP+SDV +ET  E+
Sbjct:    3 TYKVTLIDA-EGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  259 VPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            VPED+YIL  AE Q + LPF+CR   C++CA ++  G++ Q +   +  +   KG+ L CV YP SD ++ T  E+
Sbjct:   19 VPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEE 94          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER1_SPIOL5.415e-1333.60Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER5_MAIZE7.072e-1343.04Ferredoxin-5, chloroplastic OS=Zea mays GN=FDX5 PE... [more]
FER_THEVL9.236e-1339.36Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB9.236e-1339.36Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN9.236e-1339.36Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER1_ORYSJ9.236e-1343.04Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI9.236e-1343.04Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ARATH9.236e-1344.59Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_APHFL9.236e-1338.30Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]
FER_SYNLI1.206e-1240.79Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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