FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE + I LP++CR   C+SCA ++ SG+I Q +   +  +   +G+ L C  YP SDV +ET  E+
Sbjct:   15 ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_NOSMU (Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KV + +   G+     VP+D+YIL  AE   + LPF+CR   C+SC   +K G + Q +   +  +  + G  L CV YP+S+ E+ET  ED
Sbjct:    3 TYKVRLFNAAEGLDETIEVPDDEYILDAAEEAGLDLPFSCRSGSCSSCNGILKKGTVDQSDQNFLDDDQIAAGNVLTCVAYPTSNCEIETHRED 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+     G+       +D YIL  AE   + LP++CR   C++CA +I SG I Q +   +  +    GY L CV YP+SD  ++T  E+
Sbjct:    3 TYKVTLISEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_HYONI (Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++K+G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVKAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 34/94 (36.17%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ++KV + +   G+  E   P DQYIL  AE Q I LP++CR   C++CA ++ SG + Q +   +  E   +G+ L CV YP+S+  + T  E+
Sbjct:    3 SYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SOLAB (Ferredoxin OS=Solanum abutiloides PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D+YIL  AE +   LP++CR   C+SCA +I +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFECPDDEYILDRAEEEGHDLPYSCRAGSCSSCAGKIAAGSVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  262 PEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            PED YIL  AE   + LP++CR   C+SCA +++SG++ Q +   +      KG+ L CV YP+SDV + T  E
Sbjct:   17 PEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 2.687e-12
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            T++V + ++ R +     V E+  IL  AE Q+I LPF+C+   C+SC  ++  G++ Q E + +  E  +KG+ +LCV YP SD  + T  E
Sbjct:    3 TYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SOLLY (Ferredoxin OS=Solanum lyratum PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL +AE     LP++CR   C+SCA +I +G + Q +   +  +  ++G+ L CV YP S+V +ET  ED
Sbjct:   15 EFNCPDDVYILDSAEENGHDLPYSCRAGACSSCAGKITAGNVDQSDNSFLDDDQVAEGFVLTCVAYPKSNVTIETHKED 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_MEDSA (Ferredoxin OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE + I LP++CR   C+SCA ++ +G++ Q +   +  +   +G+ L CV Y  SDV +ET  E+
Sbjct:   15 EFECPDDVYILDHAEEEGIVLPYSCRAGSCSSCAGKVAAGEVNQSDGSFLDDDQIEEGWVLTCVAYAKSDVTIETHKEE 93          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER_HORVU1.206e-1241.77Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]
FER2_NOSMU1.206e-1237.23Ferredoxin-2 OS=Nostoc muscorum PE=1 SV=2[more]
FER_SPIMA1.575e-1236.17Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER2_HYONI1.575e-1240.51Ferredoxin-2 OS=Hyoscyamus niger PE=1 SV=1[more]
FER1_CYACA1.575e-1236.17Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_SOLAB2.058e-1240.51Ferredoxin OS=Solanum abutiloides PE=1 SV=1[more]
FER_CHLFU2.687e-1241.89Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FERV_ANAVT2.687e-1235.48Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]
FER_SOLLY3.510e-1240.51Ferredoxin OS=Solanum lyratum PE=1 SV=1[more]
FER_MEDSA3.510e-1239.24Ferredoxin OS=Medicago sativa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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