FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 27/76 (35.53%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  259 VPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            V +D+YIL  AE   ++LP++CR   C+SCA ++ +G++ Q +   +  +   +GY L C+ YP+SD+ ++T  E+
Sbjct:   17 VEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEE 92          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 33/82 (40.24%), Postives = 47/82 (57.32%), Query Frame = 1
Query:  238 GVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            G  +EF V +DQ+IL  AE   + LP++CR   C++CA +I  GQ+ Q E   +  +   KG+ L CV YP SD  + T  E
Sbjct:   13 GEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 1
Query:  208 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            +K+ + ++  GV      P DQYIL  AE Q + LP++CR   C++CA ++  G + Q +   +  E  + G+ L CV YP+SD  ++T  E+
Sbjct:    2 YKIQLVNQKEGVDVTINCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P D YIL  AE   I LP++CR   C+SCA ++  G++ Q +   +  E    G+ L CV YP+SDV +ET  E+
Sbjct:   67 EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEE 145          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+ +   G+       +D YIL  AE   + LP++CR   C++CA  I SG I Q +   +  +    GY L CV YP+SD  ++T  E+
Sbjct:    3 TYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEE 96          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE   I +P++CR   C+SCA ++ +G + Q +   +  E   +G+ L CV YP SDV +ET  E+
Sbjct:   15 EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  ++G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  ++G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_COLES (Ferredoxin OS=Colocasia esculenta PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 33/79 (41.77%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE   I LP++CR   C+SCA ++K G + Q +   +  E   +G+ L CV YP SD  +ET  E+
Sbjct:   15 EFQCPDDVYILDQAEEVGIDLPYSCRAGSCSSCAGKVKVGDVDQSDGSFLDDEQIGEGWVLTCVAYPVSDGTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_CYAPA (Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  262 PEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            P+D+YIL  AE Q I LP++CR   C++CA ++  G + Q +   +     + GY L CV YPSSD  V+T  E+
Sbjct:   22 PDDEYILDAAEEQGIDLPYSCRAGACSTCAGKVVEGTVDQSDQSFLDDAQLAAGYVLTCVAYPSSDCTVKTHQEE 96          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER_MARPO3.510e-1235.53Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER2_RAPSA3.510e-1240.24Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER2_CYACA3.510e-1234.41Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_PEA3.510e-1241.77Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_SPIPL4.584e-1236.17Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_SAMNI4.584e-1240.51Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_DATME4.584e-1239.24Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN4.584e-1239.24Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_COLES4.584e-1241.77Ferredoxin OS=Colocasia esculenta PE=1 SV=1[more]
FER1_CYAPA4.584e-1241.33Ferredoxin-1 OS=Cyanophora paradoxa GN=petF PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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