FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE + I LP++CR   C+SCA ++ SG+I Q +   +  +    G+ L C  YP SD+ +ET  E+
Sbjct:   61 ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEE 139          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_DATST (Ferredoxin OS=Datura stramonium PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_DATQU (Ferredoxin OS=Datura quercifolia PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFNCPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_PHYES (Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  262 PEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            P D Y+L  AE   + LP++CR   C+SCA ++ +G + Q +   +  E    G+ L CV YP+SDV +ET  E+
Sbjct:   20 PADTYVLDAAEDTGLDLPYSCRAGACSSCAGKVTAGSVNQEDGSFLDEEQMEAGWVLTCVAYPTSDVTIETHKEE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_PHYAM (Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  262 PEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            P D Y+L  AE   + LP++CR   C+SCA ++ +G + Q +   +  E    G+ L CV YP+SDV +ET  E+
Sbjct:   20 PADTYVLDAAEESGLDLPYSCRAGACSSCAGKVTAGAVNQEDGSFLEEEQMEAGWVLTCVAYPTSDVTIETHKEE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  + ++ G+ L CV YP  DV +ET  E+
Sbjct:   62 EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEE 140          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E   P+D YIL  AE   I LP++CR   C+SCA ++ SG + Q +   +  +   +G+ L CV YP+ DV +ET  E+
Sbjct:   66 ELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEE 144          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SOLNI (Ferredoxin OS=Solanum nigrum PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER_WHEAT5.987e-1240.51Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER_DATST5.987e-1239.24Ferredoxin OS=Datura stramonium PE=1 SV=1[more]
FER_DATQU5.987e-1239.24Ferredoxin OS=Datura quercifolia PE=1 SV=1[more]
FER_ATRBE5.987e-1239.24Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER2_PHYES5.987e-1238.67Ferredoxin-2 OS=Phytolacca esculenta PE=1 SV=1[more]
FER2_PHYAM5.987e-1238.67Ferredoxin-2 OS=Phytolacca americana PE=1 SV=1[more]
FER1_SOLLC5.987e-1237.97Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_MESCR5.987e-1239.24Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SOLNI7.819e-1239.24Ferredoxin OS=Solanum nigrum PE=1 SV=1[more]
FER_DATAR7.819e-1239.24Ferredoxin OS=Datura arborea PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
back to top