FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER3_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 29/94 (30.85%), Postives = 55/94 (58.51%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ++K+ + ++ +G+      P+DQYIL  AE Q + LP++CR   C++CA ++  G++ Q +   +  +    G+ L CV YP+S+  + T  E+
Sbjct:    2 SYKIHLVNKDQGIDETIECPDDQYILDAAEEQGLDLPYSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQVKAGFVLTCVAYPTSNATILTHQEE 95          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE     LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SCOJA (Ferredoxin OS=Scopolia japonica PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_LYCCN (Ferredoxin OS=Lycium chinense PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   15 EFDCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 42/132 (31.82%), Postives = 62/132 (46.97%), Query Frame = 1
Query:   88 STYNNTRNPSSLKCRPRKTVSSELQTTAGVNGSYSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            ST    R P+    +P   V   L      NG     + ++KV +      +  EF  P++ YIL  AE     LP++CR   C+SCA +I  G + Q +   +  +   +G+ L CV YP SDV +ET  E
Sbjct:   10 STSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPI--EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKE 139          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_PHYAF (Ferredoxin OS=Physalis alkekengi var. francheti PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 1
Query:  253 FLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            F  P+++YIL  AE Q   LP++CR   C+SCA ++ +G + Q +   +  +  + G+ L CV YP SDV +ET  E+
Sbjct:   16 FDCPDNEYILDAAEEQGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQVADGFVLTCVAYPQSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 42/135 (31.11%), Postives = 63/135 (46.67%), Query Frame = 1
Query:  112 PSSLKCRPRKTVSSELQTTAGV-NGSYSPSIPTHKVTVHDRFRGVVHEFLVPE---------DQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            P SL+  P     S     +G   G    ++ T+KV           +F+ PE         D Y+L  AE   I LP++CR   C+SCA ++ SG + Q +   +  E   +G+ L C  YP+SDV +ET  E+
Sbjct:   22 PISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKV-----------KFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEE 145          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_LEUGL (Ferredoxin OS=Leucaena glauca PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE   I LP++CR   C+SCA ++  G + Q +   +  E   +G+ L C  YP SDV +ET  E+
Sbjct:   14 EFECPDDVYILDQAEELGIELPYSCRAGSCSSCAGKLVEGDLDQSDQSFLDDEQIEEGWVLTCAAYPRSDVVIETHKEE 92          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 34/94 (36.17%), Postives = 51/94 (54.26%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KV +     GV      P+DQYIL  AE Q I LP++CR   C++CA ++ +G + Q +   +       G+ L CV YP+SD  + T  E+
Sbjct:    3 TYKVKLSGE--GVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEE 94          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER3_CYACA7.819e-1230.85Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER1_HYONI7.819e-1239.24Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_TOBAC1.021e-1139.24Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_SCOJA1.021e-1139.24Ferredoxin OS=Scopolia japonica PE=1 SV=1[more]
FER_LYCCN1.021e-1139.24Ferredoxin OS=Lycium chinense PE=1 SV=1[more]
FER_CAPAN1.021e-1131.82Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER_PHYAF1.742e-1138.46Ferredoxin OS=Physalis alkekengi var. francheti PE... [more]
FER2_ARATH1.742e-1131.11Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_LEUGL2.275e-1140.51Ferredoxin OS=Leucaena glauca PE=1 SV=1[more]
FER_GUITH2.275e-1136.17Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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