FC876286

Overview
NameFC876286
Unique NameFC876286
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 31/79 (39.24%), Postives = 47/79 (59.49%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF VP+D YIL  A  +   LP++CR   C+SCA ++ +G + Q +   +  +    G+ L CV YP+SDV +ET  E+
Sbjct:   15 EFEVPDDVYILDHAAEEVGDLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_PORUM (Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 32/92 (34.78%), Postives = 49/92 (53.26%), Query Frame = 1
Query:  208 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            +K+ +  +  G+   F   ED YIL  AE + I LP++CR   C++CA ++  G + Q +   +  E   KGY L C+ YP SD  + T  E
Sbjct:    3 YKIHLVSKEEGIDVTFDCSEDTYILDAAEEEGIELPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDEQMLKGYVLTCIAYPESDCTILTHVE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = 1
Query:  265 EDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            ED +IL  AE + I +PF+CR   C++CA +I+ G + Q E   +  +   +GY L CV YP+SD  + T  E+
Sbjct:   21 EDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.971e-11
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            E  VP+D YIL  AE   I LP++CR   C+SCA ++ SG + Q +   +     + G+ L C  YP+SDV +ET  E+
Sbjct:   67 ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEE 145          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_PERBI (Ferredoxin OS=Peridinium bipes PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  253 FLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            F  P D YIL  AE + + LP++CR   C+SCA ++ +G I Q +   +  +    GY L CV YP+SDV ++T  E
Sbjct:   14 FECPGDSYILDKAEEEGLELPYSCRAGSCSSCAGKVLTGSIDQSDQAFLDDDQGGDGYCLTCVTYPTSDVTIKTHCE 90          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  265 EDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EDQYIL  AE   I LP++CR   C+SC   +K G + Q +   +  +  +KG+ L C  YP+S+  +ET  ED
Sbjct:   20 EDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKED 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_CAPAA (Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.880e-11
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDE 483
            EF  P+D YIL  AE     LP++CR   C+SCA +I  G + Q +   +  +   +G+ L CV YP SDV +ET  E
Sbjct:   15 EFDCPDDVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKE 92          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.068e-11
Identity = 35/94 (37.23%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  205 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            T+KVT+      V ++   P+D+YIL +A      LP +CR   C++CA +I SG + Q E   +  +    GY L C+ YP SDV +ET  E+
Sbjct:    3 TYKVTLITPDGEVSYD--APDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEE 94          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_SOLLS (Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  250 EFLVPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            EF  P+D YIL  AE +   LP++CR   C+SCA +I  G + Q +   +  +    G+ L CV YP S+V +ET  E+
Sbjct:   15 EFNCPDDVYILDRAEEEGHDLPYSCRAGACSSCAGKIVDGSVDQSDNSFLDDDQIGGGFVLTCVAYPKSNVTIETHKEE 93          
BLAST of FC876286 vs. ExPASy Swiss-Prot
Match: FER_GLEJA (Ferredoxin OS=Gleichenia japonica PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 26/76 (34.21%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  259 VPEDQYILHTAESQNITLPFACRHRCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 486
            VP+D++IL   E   + LP++CR   C+SC  ++  G++ Q E   +  +  ++G+ L CV YP+ D+ +ET  E+
Sbjct:   18 VPDDKFILDAGEEAGLDLPYSCRAGACSSCTGKLLDGRVDQSEQSFLDDDQMAEGFVLTCVAYPAGDITIETHAEE 93          
The following BLAST results are available for this feature:
BLAST of FC876286 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FER_ARCLA2.275e-1139.24Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER_PORUM2.971e-1134.78Ferredoxin OS=Porphyra umbilicalis GN=PETF PE=1 SV... [more]
FER_BRYMA2.971e-1139.19Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER1_MAIZE2.971e-1140.51Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_PERBI3.880e-1140.26Ferredoxin OS=Peridinium bipes PE=1 SV=1[more]
FER_EUGVI3.880e-1140.54Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_CAPAA3.880e-1141.03Ferredoxin OS=Capsicum annuum var. annuum PE=1 SV=... [more]
FER1_SYNP25.068e-1137.23Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]
FER_SOLLS6.619e-1139.24Ferredoxin OS=Solanum lasiocarpum PE=1 SV=1[more]
FER_GLEJA6.619e-1134.21Ferredoxin OS=Gleichenia japonica PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32002H10EF DevOvary1 Citrus clementina cDNA clone C32002H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876286 ID=FC876286; Name=FC876286; organism=Citrus clementina; type=EST; length=488bp
GAAACCGAAGTTGAGTTATCCATGGACTTGCTCGTTCCTCCAAGCTCGTG
CTGCCGGAAACCGCCACTTCACCGGCAACTTACTTCCTCAACATACAACA
ACACTCGCAATCCCAGTTCCTTAAAATGCCGCCCTCGTAAAACGGTGTCG
TCAGAGCTCCAAACTACGGCGGGAGTGAATGGTAGCTACTCCCCGTCGAT
TCCGACTCATAAAGTGACCGTTCACGACAGGTTTCGAGGCGTCGTTCACG
AGTTCCTCGTCCCCGAGGACCAGTACATACTACACACTGCAGAATCTCAA
AATATCACTCTTCCTTTCGCTTGCAGGCACCGTTGCTGCACTAGCTGCGC
TGTGCGTATAAAATCAGGGCAAATTAAGCAGCCCGAGGCACTAGGGATAT
CAGCTGAACTCAAATCAAAGGGATATGCGCTTCTTTGTGTGGGTTACCCA
TCGTCTGATGTTGAAGTAGAAACACAGGATGAAGACGA
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