FC876289

Overview
NameFC876289
Unique NameFC876289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.521e-35
Identity = 77/161 (47.83%), Postives = 97/161 (60.25%), Query Frame = 1
Query:   94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKE---GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 558
            KIE  HE  +H  A++YYG RLAT SSD ++KI  +   NN+S  L  L GH+G VW   W HP  G ++LA+C +DG V+IWKE   G   + I  H    H +SVN + WAPHE GL L CGS+DG ISV   +      T  +D AH  GV S+SWAP
Sbjct:    3 KIENAHEGVIHHAALNYYGTRLATCSSDKTVKIFEINDVNNSSSLLETLVGHEGPVWYADWCHPSLGENLLATCGYDGKVLIWKESGHGGKMQIIGKHAV--HSASVNCVKWAPHEYGLILLCGSADGKISVVELKDGQIASTKILDNAHKFGVNSISWAP 161          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.938e-28
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N + H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.525e-27
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N + H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.991e-27
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    AP   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHAPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 69/184 (37.50%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG----VTSVSWAPSTA----PGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + V+   A    + S+    H V      + +SW PS++    P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVY--EAPDVMNLSQWSLQHEVSCKLCCSCISWNPSSSRAHPPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.436e-27
Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 567
            + I   H+D +HDV+ D++G+R+AT SSD S+K+   G++   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:    5 KSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLACSCISWNPSSS 175          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+    +N   +  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
The following BLAST results are available for this feature:
BLAST of FC876289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SC132_CANGA1.521e-3547.83Protein transport protein SEC13-2 OS=Candida glabr... [more]
SEH1B_XENLA8.938e-2836.96Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA1.525e-2736.96Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_XENTR1.991e-2736.96Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_BOVIN3.396e-2736.96Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE4.436e-2737.50Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE4.436e-2736.99Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_PONAB7.567e-2736.41Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN7.567e-2736.41Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_OSMMO2.875e-2636.41Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32003A01EF DevOvary1 Citrus clementina cDNA clone C32003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876289 ID=FC876289; Name=FC876289; organism=Citrus clementina; type=EST; length=665bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACGTGAAGGTGTGGA
GCTGTACATGGATTT
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