FC876289

Overview
NameFC876289
Unique NameFC876289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DANRE (Probable cytosolic iron-sulfur protein assembly protein ciao1 OS=Danio rerio GN=ciao1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 50/154 (32.47%), Postives = 72/154 (46.75%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAP 558
            +  GH+ TV  VA    GK LA+AS D +  I    +   + L  L GH+  V  VAWA    GS+LA+CS D +V IW+    +E+    V   H   V  + W P +    LA  S D  I ++    D  W+     + H   V S+++ P
Sbjct:   56 LSDGHQRTVRKVAWSPCGKYLASASFDATTCIWKKTDEDFECLTVLEGHENEVKCVAWA--PSGSLLATCSRDKSVWIWEVDEEDEYECLSVVNSHTQDVKHVVWHPTQ--ELLASASYDNKICIY-KEEDDDWECRATLEGHESTVWSLTFDP 204          
BLAST of FC876289 vs. ExPASy Swiss-Prot
Match: CIAO1_DROYA (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            L GHKG +W VAW HPK G++ ASC  D  + IW     N W    +  D HK ++  I W+P   G  LA  S D   +++ +++ G ++ +   + H   V SVSW+ S
Sbjct:   10 LQGHKGRIWGVAW-HPK-GNVFASCGEDKAIRIWSL-TGNTWSTKTILSDGHKRTIREIQWSP--CGQYLASASFDATTAIW-SKSSGEFECNATLEGHENEVKSVSWSRS 114          

HSP 2 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 46/153 (30.07%), Postives = 73/153 (47.71%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPS 561
            GH+  +  VA    G   A+   D +I+I  +  NT      LS GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+    G  LA  S D ++ ++    D  ++ + +  +H   V  V W P+
Sbjct:   12 GHKGRIWGVAWHPKGNVFASCGEDKAIRIWSLTGNTWSTKTILSDGHKRTIREIQWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVWHPT 159          
The following BLAST results are available for this feature:
BLAST of FC876289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CIAO1_DANRE7.602e-1132.47Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROYA9.928e-1136.04Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC32003A01EF DevOvary1 Citrus clementina cDNA clone C32003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876289 ID=FC876289; Name=FC876289; organism=Citrus clementina; type=EST; length=665bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACGTGAAGGTGTGGA
GCTGTACATGGATTT
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