FC876290

Overview
NameFC876290
Unique NameFC876290
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:72..812. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 2.286e-81
Identity = 156/204 (76.47%), Postives = 171/204 (83.82%), Query Frame = 2
Query:  116 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT +DRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNTM G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAADIIKKGK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 212          

HSP 2 Score: 21.557 bits (44), Expect = 2.286e-81
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  209 KKGKMCCLFI 218          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 296.204 bits (757), Expect = 1.225e-79
Identity = 154/208 (74.04%), Postives = 170/208 (81.73%), Query Frame = 2
Query:  116 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN MDG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG LESGNAGEPAKLIRQ+YREA+D+IKKGK
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGK 217          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 8.635e-78
Identity = 150/203 (73.89%), Postives = 166/203 (81.77%), Query Frame = 2
Query:  116 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNTMDGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGN GEPAKLIRQ+YREAADII KGK
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIRQRYREAADIINKGK 208          

HSP 2 Score: 21.1718 bits (43), Expect = 8.635e-78
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1
Query:  706 EGKMCCLMI 732
            +GKMCCL I
Sbjct:  206 KGKMCCLFI 214          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 1.915e-77
Identity = 148/203 (72.91%), Postives = 166/203 (81.77%), Query Frame = 2
Query:  116 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKK--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNTM G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG LESGNAGEPAKLIRQ+YREAAD+IKKGK
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGK 211          

HSP 2 Score: 21.557 bits (44), Expect = 1.915e-77
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  703 QEGKMCCLMI 732
            ++GKMCCL I
Sbjct:  208 KKGKMCCLFI 217          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 1.073e-75
Identity = 142/212 (66.98%), Postives = 166/212 (78.30%), Query Frame = 2
Query:   83 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKKDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAG LESGNAGEPAKLIRQ+YREAAD+I KGK
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGK 219          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.276e-52
Identity = 106/183 (57.92%), Postives = 131/183 (71.58%), Query Frame = 2
Query:  176 SRIPPSKVPSASFKITAEVDENKQTKKDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIKKGK 715
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAG LESGNAGEPAKLIR +YREA+DIIKKG+
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGR 194          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.088e-27
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  446 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIK-KGK 715
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S G LES +AG+PA+LIR +YRE A++IK +GK
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGK 94          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.421e-27
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  446 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKLIRQKYREAADIIK-KGK 715
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S G LES +AG+PA+LIR +YRE A++IK +GK
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGK 94          
BLAST of FC876290 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.203e-26
Identity = 74/133 (55.64%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  269 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGRLESGNAGEPAKL 667
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMSAG LESGNAGEPAK+
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNAGEPAKM 81          
The following BLAST results are available for this feature:
BLAST of FC876290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ2.286e-8176.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.225e-7974.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU8.635e-7873.89Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.915e-7772.91Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.073e-7566.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE1.276e-5257.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.088e-2763.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP1.421e-2763.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.203e-2655.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC32003A02EF DevOvary1 Citrus clementina cDNA clone C32003A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876290 ID=FC876290; Name=FC876290; organism=Citrus clementina; type=EST; length=741bp
GGCTTCGCTTTCCTTTGCCTGCATTGCAGCGTGACCCTTTAGCTACTTCA
ATCACAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTGCTGTACCGTTG
AGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGCTCATCTTTCTT
TGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCCATCCAAGGTCC
CTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGAACAAGCAGACC
AAGAAGGACAGATGGAAGGGCCTTGCCTACGACGAATCTGATGACCAACA
AGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTTCCAAGCCCCCA
TGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATGACTACATCAGC
CAAGGTCTCCGCACATACAACTTGGACAACACGATGGACGGTCTCTACAT
TGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCA
TGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTATTTGGGGAGGC
AAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGG
CATCAACCCAATTATGATGAGTGCCGGAAGATTGGAAAGTGGCAATGCTG
GAGAACCCGCTAAGTTGATCAGGCAGAAGTACCGTGAGGCAGCTGACATT
ATCAAGAAGGGAAAATGTGCTGCCTCATGATCATGATCTTG
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