FC876292

Overview
NameFC876292
Unique NameFC876292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:7..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  435 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            +Q +   ++ R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+
Sbjct:   25 DQHQPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFPE 96          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 39/69 (56.52%), Postives = 45/69 (65.22%), Query Frame = 3
Query:  444 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            +KS  R+R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAK+NFP+
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPE 127          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  414 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 671
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRP 249          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  465 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+
Sbjct:   86 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPE 147          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  438 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPRA 677
            +  K    + K  YRG+RQRPWGK+AAEIRDP K G RVWLGTF+T              +RG KA +NFP E     PRA
Sbjct:  143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGKWKPRA 223          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  402 KSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA 662
            KS G    + V      T RK+   +RG+RQRPWG+WAAEIRDPT+G RVWLGT++T              ++G  A  NFP  T A
Sbjct:   76 KSIGDRKRRSVSPDSDVTRRKK---FRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTA 159          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = 3
Query:  462 KRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPRAQ 680
            + K  YRG+R RPWGK+AAEIRDPT +G RVWLGTF T              +RG KA +NFP E     PRA+
Sbjct:  132 EEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVDKWNPRAE 205          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 3
Query:  474 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            ++RG+RQRPWGKWAAEIRDP++ VRVWLGTF+T              +RG  A++NFP
Sbjct:   86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 37/63 (58.73%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  468 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA VNFP E
Sbjct:  142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLE 204          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 37/63 (58.73%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  468 KNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            K  YRG+RQRPWGK+AAEIRDP  KG RVWLGTF+T              +RG KA VNFP E
Sbjct:  135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLE 197          
The following BLAST results are available for this feature:
BLAST of FC876292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
EF113_ARATH1.975e-1550.00Ethylene-responsive transcription factor ERF113 OS... [more]
EF112_ARATH1.975e-1556.52Ethylene-responsive transcription factor ERF112 OS... [more]
ABR1_ARATH3.369e-1546.51Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF114_ARATH7.505e-1556.45Ethylene-responsive transcription factor ERF114 OS... [more]
EF102_ARATH4.865e-1449.38Ethylene-responsive transcription factor 5 OS=Arab... [more]
PTI6_SOLLC1.084e-1344.83Pathogenesis-related genes transcriptional activat... [more]
EF103_ARATH1.849e-1351.35Ethylene-responsive transcription factor 6 OS=Arab... [more]
CRF1_ARATH4.118e-1355.17Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF5_TOBAC7.025e-1358.73Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF5_NICSY7.025e-1358.73Ethylene-responsive transcription factor 5 OS=Nico... [more]

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Properties
Property NameValue
Genbank descriptionC32003A05EF DevOvary1 Citrus clementina cDNA clone C32003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876292 ID=FC876292; Name=FC876292; organism=Citrus clementina; type=EST; length=709bp
GATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGT
GCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGC
TATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGC
TGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAG
TACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATT
CAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATG
CCGACTTGATGATGGCTGATATTAAGCCTTTTCACTTTCTCAGCTGGTCG
CAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAAT
CCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCA
TGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGT
CTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATG
CCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGAT
GAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGGCAACTCTCAGAAA
TCCGTTCCC
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