FC876292

Overview
NameFC876292
Unique NameFC876292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:7..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3
Query:  453 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            T  +++  +RG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   25 TTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  432 VEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            V+ A   T      +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 3
Query:  390 SAGRKSHGSTAVKHVEQAKKSTERKRKN----QYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            S+  + + S++    +Q+ K  ER  +      YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +              +RG+KA +NFP
Sbjct:   77 SSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.553e-12
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 3
Query:  447 KSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            K+ + + +  YRG+R+RPWGK+AAEIRDP  KG R+WLGT++T              +RG+KA +NFP
Sbjct:   78 KTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  474 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 44/103 (42.72%), Postives = 53/103 (51.46%), Query Frame = 3
Query:  378 LFTFSAGRKSHGSTAVKHVEQAKKS---TERKRK-NQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 671
            LF F A +           E+ KK+   TE   K   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NFP    +  P
Sbjct:   80 LFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEP 182          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 3
Query:  453 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            T   ++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   19 TNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = 3
Query:  405 SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            SHGS         KK  + K K  YRG R R WGKW +EIR+P K  R+WLGTF T              I+G  A +NFP+
Sbjct:    4 SHGSDT--ECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPE 83          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 3
Query:  399 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            R+   + A   V      +   ++ ++RG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:    2 RRGRAAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 3
Query:  438 QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPRAQ*KATLR 698
            +A  + + KR+  ++GIR R WGKW AEIR+P K  R+WLG+++T              +RG  A +NFP+  P  +      AT+R
Sbjct:    8 KADVAVKMKRERPFKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELLPCTSAEDMSAATIR 94          
The following BLAST results are available for this feature:
BLAST of FC876292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ERF80_ARATH4.553e-1249.23Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF76_ARATH4.553e-1248.61Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF106_ARATH4.553e-1240.66Ethylene-responsive transcription factor ERF106 OS... [more]
EF104_ARATH4.553e-1247.06Ethylene-responsive transcription factor ERF104 OS... [more]
ERF78_ARATH5.947e-1255.17Ethylene-responsive transcription factor 4 OS=Arab... [more]
EF101_ARATH5.947e-1242.72Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF4_NICSY1.014e-1150.77Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF42_ARATH1.325e-1142.68Ethylene-responsive transcription factor ERF042 OS... [more]
ERF3_TOBAC1.730e-1139.76Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF11_ARATH1.730e-1136.78Ethylene-responsive transcription factor ERF011 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32003A05EF DevOvary1 Citrus clementina cDNA clone C32003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876292 ID=FC876292; Name=FC876292; organism=Citrus clementina; type=EST; length=709bp
GATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGT
GCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGC
TATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGC
TGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAG
TACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATT
CAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATG
CCGACTTGATGATGGCTGATATTAAGCCTTTTCACTTTCTCAGCTGGTCG
CAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAAT
CCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCA
TGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGT
CTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATG
CCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGAT
GAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGGCAACTCTCAGAAA
TCCGTTCCC
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