FC876292

Overview
NameFC876292
Unique NameFC876292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:7..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 3
Query:  477 YRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 671
            YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NFP    +  P
Sbjct:  148 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEP 213          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 3
Query:  444 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF 644
            K S   + + +YRG+RQRPWGKWAAEIRDP +  R+WLGTF T              +RG  A  NF
Sbjct:  106 KPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 3
Query:  435 EQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            E+ K++     + +Y+GIR R WGKW AEIR+P K  R+WLG++ T              +RG  A++NFP+E
Sbjct:   22 EKPKRNLISSNEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEE 94          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  477 YRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T              +RG KA +NFP
Sbjct:   99 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 156          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  477 YRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            YRG+RQRPWGK+AAEIRDP K G RVWLGT+ T              +RG KA +NFP
Sbjct:  103 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFP 160          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 3
Query:  459 RKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            RKR   Y+GIR R WGKW AEIR+P K  R+WLG+++T              +RG  A++NFP+
Sbjct:   24 RKRDKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 3
Query:  474 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF 644
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NF
Sbjct:   30 RYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNF 86          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 33/80 (41.25%), Postives = 43/80 (53.75%), Query Frame = 3
Query:  411 GSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            GS A             K+K  YRG+RQR WGKW AEIR P   +RVWLGT++T              +RG+ A++NFP+
Sbjct:  114 GSPAAAFAAALAAGRVTKKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPN 193          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 30/67 (44.78%), Postives = 40/67 (59.70%), Query Frame = 3
Query:  459 RKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETP 659
            RKR   Y+GIR R WGKW AEIR+P K  R+WLG+++T              +RG  A++NFP+  P
Sbjct:   15 RKRDRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLP 81          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 34/74 (45.95%), Postives = 47/74 (63.51%), Query Frame = 3
Query:  435 EQAKKST--ERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            E+ K++T    + +  YRG+R+RPWGK+AAEIRD T KG+RVWLGTF+T              ++G  A +NFP
Sbjct:   66 EEGKEATVAAEEEEKSYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFP 139          
The following BLAST results are available for this feature:
BLAST of FC876292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
EF100_ARATH1.730e-1151.52Ethylene-responsive transcription factor 1A OS=Ara... [more]
CRF4_ARATH1.730e-1147.76Ethylene-responsive transcription factor CRF4 OS=A... [more]
RAP29_ARATH2.260e-1139.73Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF2_TOBAC2.260e-1156.90Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY2.260e-1156.90Ethylene-responsive transcription factor 2 OS=Nico... [more]
RA210_ARATH2.951e-1145.31Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF79_ARATH2.951e-1154.39Ethylene-responsive transcription factor 8 OS=Arab... [more]
ERF61_ARATH2.951e-1141.25Ethylene-responsive transcription factor ERF061 OS... [more]
ERF10_ARATH2.951e-1144.78Ethylene-responsive transcription factor ERF010 OS... [more]
ERF94_ARATH3.855e-1145.95Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32003A05EF DevOvary1 Citrus clementina cDNA clone C32003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876292 ID=FC876292; Name=FC876292; organism=Citrus clementina; type=EST; length=709bp
GATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGT
GCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGC
TATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGC
TGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAG
TACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATT
CAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATG
CCGACTTGATGATGGCTGATATTAAGCCTTTTCACTTTCTCAGCTGGTCG
CAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAAT
CCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCA
TGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGT
CTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATG
CCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGAT
GAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGGCAACTCTCAGAAA
TCCGTTCCC
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