FC876292

Overview
NameFC876292
Unique NameFC876292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10278 contig Ccv1_Contig10278:7..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 32/63 (50.79%), Postives = 37/63 (58.73%), Query Frame = 3
Query:  462 KRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            K KN YRG+RQR WGKW AEIR P    R+WLGTF T              +RG  AK+NFP+
Sbjct:   66 KTKNLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPN 128          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  414 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 647
            ST+V     A  + + K ++ YRG+RQRPWGK+AAEIRDP K G RVWLGT+ +              +RG KA +NFP
Sbjct:   87 STSVSPPTVAPAALQPKGRH-YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFP 164          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.855e-11
Identity = 40/93 (43.01%), Postives = 49/93 (52.69%), Query Frame = 3
Query:  390 SAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF---PDETP 659
            +A RK         V +   ST  K K +YRG+RQRPWGK+AAEIRDP+   R+WLGTF T              ++G KA  NF   P  TP
Sbjct:   77 TAARKGKHKEEESVVVEDDVSTSVKPK-KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTP 168          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  474 QYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            +YRG+R+RPWGK+AAEIRD  + G RVWLGTFNT              +RG++A +NFP E
Sbjct:   13 KYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 34/78 (43.59%), Postives = 43/78 (55.13%), Query Frame = 3
Query:  417 TAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 650
            T++K ++ A K  +      YRG+RQR WGKW AEIR P    R+WLGTF T              IRG  A++NFPD
Sbjct:   96 TSMKKIDVATKPVKL-----YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPD 168          
BLAST of FC876292 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  444 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE 653
            K  + RK +  YRG+R+RPWGK+AAEIRD T+ G+RVWLGTF +              +RG  A +NF  E
Sbjct:   71 KSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
The following BLAST results are available for this feature:
BLAST of FC876292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ERF56_ARATH3.855e-1150.79Ethylene-responsive transcription factor ERF056 OS... [more]
ERF1_SOLLC3.855e-1146.84Ethylene-responsive transcription factor 1 OS=Sola... [more]
CRF6_ARATH3.855e-1143.01Ethylene-responsive transcription factor CRF6 OS=A... [more]
ERF95_ARATH5.034e-1152.46Ethylene-responsive transcription factor ERF095 OS... [more]
ERF57_ARATH5.034e-1143.59Ethylene-responsive transcription factor ERF057 OS... [more]
ERF92_ARATH8.587e-1146.48Ethylene-responsive transcription factor 1B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC32003A05EF DevOvary1 Citrus clementina cDNA clone C32003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876292 ID=FC876292; Name=FC876292; organism=Citrus clementina; type=EST; length=709bp
GATCATTCACTAGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAA
GCAAATTTTACATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGT
GCCTGAACAAACCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGC
TATCATTTCGGGCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGC
TGACGGCGGAGTATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAG
TACTCAAAGCCGATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATT
CAAGGACGATGAAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATG
CCGACTTGATGATGGCTGATATTAAGCCTTTTCACTTTCTCAGCTGGTCG
CAAGTCTCATGGATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAAT
CCACAGAAAGAAAGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCA
TGGGGAAAATGGGCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGT
CTGGCTAGGAACTTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATG
CCGAGGCACGGAGGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGAT
GAAACTCCTGCTGCTGCTCCAAGAGCTCAGTGAAAGGCAACTCTCAGAAA
TCCGTTCCC
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