FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIMA (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup A GN=carA PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20 Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY Q V +T PHIGNTG N +DEESR + AGL+IR L + SN+R +E+L +YL + I+D+DTR +T LR+ G+ G + T + ++ E+ ++ +VG DL +VS E +E E +G Sbjct: 47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALG 178
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CORDI (Carbamoyl-phosphate synthase small chain OS=Corynebacterium diphtheriae GN=carA PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20 Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKS-DQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY Q V+ T P IGNTG N +D ES + ++AGLVIR LS SNWR +L + + E+NI+GIS VDTRAI R LR GS+ G+ S E +K EL+E+ +S + G DL S+VS QE + Sbjct: 51 SYHRQIVVATAPQIGNTGWNDEDGESHGDKIWVAGLVIRDLSTAVSNWRAKRSLEDEMREQNIVGISGVDTRAIVRHLRNFGSVAAGIFSGEAAKQPHDELIEIVKSQPSMAGADLASEVSTQEAY 176
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEST (Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri GN=carA PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 3.919e-20 Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SYA Q V +T PH+GNTG D ES + + AGLVIR L + SNWR ++L +YL E + + I+ +DTR +TR LR+ G+ G + ++++ LE++RS+ + G+DL +VS +E +E Sbjct: 51 SYAKQIVTLTYPHVGNTGTTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILREKGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKERYE 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSESM (Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae pv. tomato GN=carA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.118e-20 Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SYA Q V +T PHIGNTG +D ES + + AGLVIR L + SNWR +LG+YL N++ I+ +DTR +TR LR+ G+ G + ++ S++ + +R + + G+DL +VS ++ +E Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILREKGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKDTYE 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECOL6 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O6 GN=carA PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 8.730e-20 Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + ++ LE +R++ + G+DL +V+ EP+ + + Sbjct: 47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGS 174
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HAEDU (Carbamoyl-phosphate synthase small chain OS=Haemophilus ducreyi GN=carA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19 Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRS-----WDIVGIDLISDVSGQEPFEMVE 375 SYA Q V +T PHIGNTG N +D ES Q + +GL+IR L + SN+R +L +YL + NI+ I+D+DTR +TR LR+ GS G + E++S + +E ++ + G DL +V+ Q +E E Sbjct: 50 SYAKQIVTLTYPHIGNTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNIIAIADIDTRRLTRILRETGSQAGCIYIPNENESLAQAVEKAQDLAKSFGSMAGKDLAKEVTCQHRYEWQE 180
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PELCD (Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19 Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375 SY G+ V MT P IGN G+N +D ES + L+G +++ SNWR TL +YL + I+GI +DTRA+ R +R +G+ G++S+ + + + + ++ IVG DL+ +V+ +EP+ E Sbjct: 45 SYCGEIVTMTYPLIGNYGINPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRDNGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEPYHWTE 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ANASP (Carbamoyl-phosphate synthase small chain OS=Anabaena sp. (strain PCC 7120) GN=carA PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19 Identity = 47/130 (36.15%), Postives = 81/130 (62.31%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ V+ T P +GNTGVN +DEES + + G + R++ SNWR ++L +YL + +I GI +DTRA+TR++R G++ G +STE + L ++ + ++ G++L+ +V+ +E + T + Sbjct: 51 SYRGQIVVFTYPELGNTGVNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRMYGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVTTSTVYEWSDPTTAV 180
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBPA (Carbamoyl-phosphate synthase small chain OS=Vibrio parahaemolyticus GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19 Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ +E ++ Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESSSIHAQGLVIRDLPLIASNFRNEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBCH (Carbamoyl-phosphate synthase small chain OS=Vibrio cholerae GN=carA PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY+ Q V +T PHIGNTG N +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + ++ + L ++ + + G+DL VS +E + Sbjct: 47 SYSQQIVTLTYPHIGNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAY 168 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |