FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_NEIMA (Carbamoyl-phosphate synthase small chain OS=Neisseria meningitidis serogroup A GN=carA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.347e-20
Identity = 53/132 (40.15%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY  Q V +T PHIGNTG N +DEESR  + AGL+IR L +  SN+R +E+L +YL     + I+D+DTR +T  LR+ G+  G + T    + ++  E+  ++  +VG DL  +VS  E +E  E    +G
Sbjct:   47 SYCKQIVTLTYPHIGNTGTNAEDEESRSVYAAGLIIRDLPLLHSNFRASESLHDYLVRNKTVAIADIDTRRLTTLLREKGAQGGAILTGADATIEKAQELIAAFGSMVGKDLAKEVSCTETYEWTEGEWALG 178          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CORDI (Carbamoyl-phosphate synthase small chain OS=Corynebacterium diphtheriae GN=carA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.001e-20
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKS-DQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ES   + ++AGLVIR LS   SNWR   +L + + E+NI+GIS VDTRAI R LR  GS+  G+ S E +K    EL+E+ +S   + G DL S+VS QE +
Sbjct:   51 SYHRQIVVATAPQIGNTGWNDEDGESHGDKIWVAGLVIRDLSTAVSNWRAKRSLEDEMREQNIVGISGVDTRAIVRHLRNFGSVAAGIFSGEAAKQPHDELIEIVKSQPSMAGADLASEVSTQEAY 176          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSEST (Carbamoyl-phosphate synthase small chain OS=Pseudomonas stutzeri GN=carA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.919e-20
Identity = 51/123 (41.46%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SYA Q V +T PH+GNTG    D ES + + AGLVIR L +  SNWR  ++L +YL E + + I+ +DTR +TR LR+ G+  G +      ++++ LE++RS+  + G+DL  +VS +E +E
Sbjct:   51 SYAKQIVTLTYPHVGNTGTTPQDAESWKVWAAGLVIRDLPLLASNWRNKQSLPDYLKENDTVAIAGIDTRRLTRILREKGAQNGCILAGADATEEKALELARSFPGLKGMDLAKEVSVKERYE 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PSESM (Carbamoyl-phosphate synthase small chain OS=Pseudomonas syringae pv. tomato GN=carA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.118e-20
Identity = 50/123 (40.65%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SYA Q V +T PHIGNTG   +D ES + + AGLVIR L +  SNWR   +LG+YL   N++ I+ +DTR +TR LR+ G+  G +   ++ S++  +  +R +  + G+DL  +VS ++ +E
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAESDRVWSAGLVIRDLPLVASNWRNKMSLGDYLKANNVVAIAGIDTRRLTRILREKGAQNGCIMAGDNISEEAAIAAARGFPGLKGMDLAKEVSTKDTYE 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ECOL6 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O6 GN=carA PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.730e-20
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVEST 381
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  EP+   + +
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HAEDU (Carbamoyl-phosphate synthase small chain OS=Haemophilus ducreyi GN=carA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRS-----WDIVGIDLISDVSGQEPFEMVE 375
            SYA Q V +T PHIGNTG N +D ES Q + +GL+IR L +  SN+R   +L +YL + NI+ I+D+DTR +TR LR+ GS  G +    E++S  + +E ++        + G DL  +V+ Q  +E  E
Sbjct:   50 SYAKQIVTLTYPHIGNTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNIIAIADIDTRRLTRILRETGSQAGCIYIPNENESLAQAVEKAQDLAKSFGSMAGKDLAKEVTCQHRYEWQE 180          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PELCD (Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=carA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 46/125 (36.80%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375
            SY G+ V MT P IGN G+N +D ES +  L+G +++      SNWR   TL +YL +  I+GI  +DTRA+ R +R +G+  G++S+ +   +  + +  ++  IVG DL+ +V+ +EP+   E
Sbjct:   45 SYCGEIVTMTYPLIGNYGINPEDVESGRPHLSGFIVKEACPYPSNWRSTTTLDDYLKQNQIVGIQGIDTRALVRHIRDNGAQTGIISSIDLDPESLVEKARKAPSIVGRDLVKEVTCKEPYHWTE 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_ANASP (Carbamoyl-phosphate synthase small chain OS=Anabaena sp. (strain PCC 7120) GN=carA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 47/130 (36.15%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ V+ T P +GNTGVN +DEES +  + G + R++    SNWR  ++L +YL + +I GI  +DTRA+TR++R  G++ G +STE     + L ++  + ++ G++L+ +V+    +E  + T  +
Sbjct:   51 SYRGQIVVFTYPELGNTGVNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRMYGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVTTSTVYEWSDPTTAV 180          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBPA (Carbamoyl-phosphate synthase small chain OS=Vibrio parahaemolyticus GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFE 366
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ +E ++
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESSSIHAQGLVIRDLPLIASNFRNEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKEAYQ 169          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_VIBCH (Carbamoyl-phosphate synthase small chain OS=Vibrio cholerae GN=carA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +   ++  +   L  ++ +  + G+DL   VS +E +
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESTAIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIMAGDNLDEALALAKAKEFPGLKGMDLAKVVSTKEAY 168          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_NEIMA1.347e-2040.15Carbamoyl-phosphate synthase small chain OS=Neisse... [more]
CARA_CORDI3.001e-2048.41Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_PSEST3.919e-2041.46Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_PSESM5.118e-2040.65Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_ECOL68.730e-2040.63Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_HAEDU1.140e-1940.46Carbamoyl-phosphate synthase small chain OS=Haemop... [more]
CARA_PELCD1.489e-1936.80Carbamoyl-phosphate synthase small chain OS=Peloba... [more]
CARA_ANASP2.540e-1936.15Carbamoyl-phosphate synthase small chain OS=Anabae... [more]
CARA_VIBPA3.317e-1939.84Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]
CARA_VIBCH3.317e-1940.98Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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