FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_OCHA4 (Carbamoyl-phosphate synthase small chain OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=carA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.325e-11
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEES-KSDQELLE-MSRSWD-IVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R  E L  +L  R ++ ++ +DTRA+T  +R+ G+   V++ + S K D E L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGTNAEDVEDLTPANRHGAVGAIFKADITSPSNFRATEDLDAWLKNRGVIALAGIDTRALTSLIRERGAQNAVIAHDPSGKFDLEALKARAAAWSGLENLDLAKDVT 182          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRR6 (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=carA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261
            SY GQ +  T P +GN G+N DD ES      G+V+   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L+
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLT 132          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRPN (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae GN=carA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS 261
            SY GQ +  T P +GN G+N DD ES      G+V+   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L+
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLT 132          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HELPJ (Carbamoyl-phosphate synthase small chain OS=Helicobacter pylori J99 GN=carA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.408e-11
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR-QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQFV+ + P IG  G N  D+ES   C  AG++ R  +   SN R   +L  YL +R ++GIS VDTR++ + LR  G L+ + ST E   ++    +  +  I    L+S VS
Sbjct:   44 SYKGQFVVFSMPEIGVVGANPKDDESFFSC--AGVLARHYNEFFSNSRADSSLSTYLKKRGVLGISGVDTRSLIKTLRHHGCLMMIASTIEHDRNKLEEVLKNAPKISHSPLVSSVS 158          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: PYR1_YEAST (Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 PE=1 SV=4)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGV---NFDDE---------ESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW 312
            SY GQ +++T P +GN GV   +  DE         ES +  +AGLVI   +   S++    +LG +L    I  +  VDTR++T+ LR  GS++G LS E+S SD+  +  S SW
Sbjct:   64 SYEGQILVITYPLVGNYGVPDMHLRDELVEELPRYFESNRIHIAGLVISHYTDEYSHYLRKSSLGKWLQNEGIPAVYGVDTRSLTKHLRDAGSMLGRLSLEKSGSDR-TISRSSSW 178          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HELAH (Carbamoyl-phosphate synthase small chain OS=Helicobacter acinonychis (strain Sheeba) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEE 270
            SY GQFV+ + P IG  G N  D+ES     AG+++R  +   SN R   +L  YL ER ++GI  VDTR++ + LR  G L+ V ST E
Sbjct:   44 SYKGQFVIFSMPEIGVVGANSKDDESFFSS-AGILVRHYNEFFSNSRADFSLSAYLKERGVLGICGVDTRSLIKTLRHHGCLMMVASTIE 132          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BRUSU (Carbamoyl-phosphate synthase small chain OS=Brucella suis GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BRUSI (Carbamoyl-phosphate synthase small chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BRUC2 (Carbamoyl-phosphate synthase small chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.675e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_OCHA43.325e-1134.15Carbamoyl-phosphate synthase small chain OS=Ochrob... [more]
CARA_STRR67.408e-1140.23Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_STRPN7.408e-1140.23Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_HELPJ7.408e-1137.61Carbamoyl-phosphate synthase small chain OS=Helico... [more]
PYR1_YEAST9.675e-1137.07Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 P... [more]
CARA_HELAH9.675e-1143.33Carbamoyl-phosphate synthase small chain OS=Helico... [more]
CARA_BRUSU9.675e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]
CARA_BRUSI9.675e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]
CARA_BRUC29.675e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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