FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVM (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=carA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIV-GIDLISDVSGQEPF 363
            SYAGQ V MT P IGN GV  +D ES +  +   +++      SNWR   +L +YLA+  +MGI  +DTRA+TR LR +G++ G++STE    D EL+  +R+   + G +L++ V+   P+
Sbjct:   45 SYAGQMVCMTYPLIGNYGVTAEDMESGKVHVEAFIVKECCRTPSNWRAIMSLPDYLAQHGVMGIEGIDTRALTRHLRINGAMRGIISTETDDRD-ELVRRARALPTMEGQNLVTRVAPATPY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRAW (Carbamoyl-phosphate synthase small chain OS=Streptomyces avermitilis GN=carA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18
Identity = 46/123 (37.40%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGQEPF 363
            SY  Q V+MT PH+GNTGVN +D ES++ +++G V+R  +   SNWR   +L   L  + ++GIS +DTRA+TR LR+ G++ +G+ S      +  +L E+ ++ ++ G +L ++V+ +E +
Sbjct:   55 SYHRQVVVMTAPHVGNTGVNDEDPESKRIWVSGYVVRDPARVPSNWRSRRSLDEELRHQGVVGISGIDTRALTRHLRESGAMRVGIFSGSALPDEGTMLAEVRQAPEMKGANLAAEVATKETY 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PROA2 (Carbamoyl-phosphate synthase small chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=carA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.171e-18
Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST---EESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SYAGQ V+MT P IGN GVN  D ES++ + + L++R +S   SN+    +L  YL E  +MG++ +DTR + R +RQ G++ GV+S    +E + +++ L++    ++ G+DL+  VS  + +
Sbjct:   48 SYAGQMVVMTYPLIGNYGVNQSDAESQKIWASALIVREMSNIHSNFAATGSLDQYLKEAKVMGLAGIDTRKLVREIRQKGAMRGVISAIDPDEKRLEEKALKIP---EMTGLDLVKKVSTSQTY 168          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CAMJE (Carbamoyl-phosphate synthase small chain OS=Campylobacter jejuni GN=carA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 43/121 (35.54%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SYAGQF++ + P IG  G N +D ES++ F +G+++R LS   SN+R  E+L +YL +   +GI ++DTR + + +R +G+L  V+STE S  +   + + +S  I  ++ + +VS ++ +
Sbjct:   45 SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEKHGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVSTKKNY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RALSO (Carbamoyl-phosphate synthase small chain OS=Ralstonia solanacearum GN=carA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17
Identity = 51/133 (38.35%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393
            SY+ Q V +T PHIGN GVN +D E+ +   AGL+I+ L I  SN+R   +L +YL    ++ I+ +DTR +TR LR+ G+  G VL+ E+  + Q+ ++++RS+  + G+DL   VS  +P+E  ++   +G
Sbjct:   50 SYSRQIVTLTYPHIGNVGVNREDVEATKVHAAGLIIKDLPILASNFRQEHSLSHYLKGEKVVAIAGIDTRKLTRILREKGAQNGCVLAGED--NPQKAIDLARSFPGLSGMDLAKVVSVTQPYEWNQTEWALG 180          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESMR (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=carA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY GQ V MT PH+GN G+N +D ES    +AG +++      SNWR   TL  YL  + I GI  +DTRA+TR LR  G++ G +ST+ S   Q ++ +++    + G+ L   V    PF
Sbjct:   45 SYTGQMVCMTYPHVGNYGINPEDIESAHIRVAGFIVKECCKEPSNWRSTMTLPEYLTSQGITGIEGIDTRALTRHLRLHGAMRGYISTDVS-DPQRVVGLAKGLPSMEGLGLADRVCCDAPF 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XANAC (Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis pv. citri GN=carA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17
Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381
            SYA Q V +T PHIGNTG    D+E+R+ + AGL++R +    SNWR    L  +L  R ++ IS +DTR +TR LRQ G+  G L   +   ++ L    +   + G+DL   VS +  +   E +
Sbjct:   47 SYARQMVTLTYPHIGNTGFTDQDDEARKIWAAGLIVRDVPRRPSNWRSQVALPEWLQARGVVAISGIDTRKLTRLLRQKGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVSTESTYNWKEGS 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_POLSQ (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=carA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17
Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGQEPFEMVE 375
            SY  Q V +T PHIGN GVN  D ES +   AGLVI+ L    SN+R    L  YL E  ++GI+ +DTR +TR LR  G+  G +   ++  D E      LE+ +++  + G+DL   V+ ++P+E  E
Sbjct:   53 SYCSQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVIKDLPKRVSNFRSEAPLDAYLTEAGVVGIAGIDTRKLTRILRDKGAQSGAIVAGKAGDDYETLGKKALELVKAFPGMAGLDLAKVVTTKKPYEWRE 183          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_COREF (Carbamoyl-phosphate synthase small chain OS=Corynebacterium efficiens GN=carA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17
Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQ--CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ES     ++AGLVIR L++  SNWR   TL   +A++ ++GI  +DTRA+ R +R +G++  G+ S  +  +  +EL+E+ +S   +VG +L  +VS  +P+
Sbjct:   66 SYHRQIVVATAPQIGNTGWNEEDNESHDGSIWVAGLVIRDLAVRVSNWRATTTLQEEMAKQGVVGIGGIDTRALVRHIRNEGAVPAGIFSGADAERPIEELVEIVKSQPSMVGANLAVEVSVDKPY 191          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XYLFA (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa GN=carA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375
            SYA Q V +T PHIGNTG    D+E+ + + AGL++R +    SNWR   +L ++LA R ++ I+ +DTR +TR LR+ G+  G L   E   D+      +   I G+DL   VS ++ +   E
Sbjct:   47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVDRAQDAARQFTGIKGMDLAKVVSTKQAYSWYE 171          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_DESVM3.668e-1840.16Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_STRAW4.790e-1837.40Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_PROA28.171e-1837.10Carbamoyl-phosphate synthase small chain OS=Prosth... [more]
CARA_CAMJE1.067e-1735.54Carbamoyl-phosphate synthase small chain OS=Campyl... [more]
CARA_RALSO2.377e-1738.35Carbamoyl-phosphate synthase small chain OS=Ralsto... [more]
CARA_DESMR2.377e-1739.34Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_XANAC3.105e-1737.01Carbamoyl-phosphate synthase small chain OS=Xantho... [more]
CARA_POLSQ3.105e-1738.93Carbamoyl-phosphate synthase small chain OS=Polynu... [more]
CARA_COREF3.105e-1739.68Carbamoyl-phosphate synthase small chain OS=Coryne... [more]
CARA_XYLFA4.055e-1737.60Carbamoyl-phosphate synthase small chain OS=Xylell... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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