FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESVM (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=carA PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18 Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIV-GIDLISDVSGQEPF 363 SYAGQ V MT P IGN GV +D ES + + +++ SNWR +L +YLA+ +MGI +DTRA+TR LR +G++ G++STE D EL+ +R+ + G +L++ V+ P+ Sbjct: 45 SYAGQMVCMTYPLIGNYGVTAEDMESGKVHVEAFIVKECCRTPSNWRAIMSLPDYLAQHGVMGIEGIDTRALTRHLRINGAMRGIISTETDDRD-ELVRRARALPTMEGQNLVTRVAPATPY 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STRAW (Carbamoyl-phosphate synthase small chain OS=Streptomyces avermitilis GN=carA PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.790e-18 Identity = 46/123 (37.40%), Postives = 80/123 (65.04%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGQEPF 363 SY Q V+MT PH+GNTGVN +D ES++ +++G V+R + SNWR +L L + ++GIS +DTRA+TR LR+ G++ +G+ S + +L E+ ++ ++ G +L ++V+ +E + Sbjct: 55 SYHRQVVVMTAPHVGNTGVNDEDPESKRIWVSGYVVRDPARVPSNWRSRRSLDEELRHQGVVGISGIDTRALTRHLRESGAMRVGIFSGSALPDEGTMLAEVRQAPEMKGANLAAEVATKETY 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PROA2 (Carbamoyl-phosphate synthase small chain OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=carA PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.171e-18 Identity = 46/124 (37.10%), Postives = 78/124 (62.90%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST---EESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SYAGQ V+MT P IGN GVN D ES++ + + L++R +S SN+ +L YL E +MG++ +DTR + R +RQ G++ GV+S +E + +++ L++ ++ G+DL+ VS + + Sbjct: 48 SYAGQMVVMTYPLIGNYGVNQSDAESQKIWASALIVREMSNIHSNFAATGSLDQYLKEAKVMGLAGIDTRKLVREIRQKGAMRGVISAIDPDEKRLEEKALKIP---EMTGLDLVKKVSTSQTY 168
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CAMJE (Carbamoyl-phosphate synthase small chain OS=Campylobacter jejuni GN=carA PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17 Identity = 43/121 (35.54%), Postives = 77/121 (63.64%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SYAGQF++ + P IG G N +D ES++ F +G+++R LS SN+R E+L +YL + +GI ++DTR + + +R +G+L V+STE S + + + +S I ++ + +VS ++ + Sbjct: 45 SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEKHGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVSTKKNY 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RALSO (Carbamoyl-phosphate synthase small chain OS=Ralstonia solanacearum GN=carA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17 Identity = 51/133 (38.35%), Postives = 84/133 (63.16%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQIG 393 SY+ Q V +T PHIGN GVN +D E+ + AGL+I+ L I SN+R +L +YL ++ I+ +DTR +TR LR+ G+ G VL+ E+ + Q+ ++++RS+ + G+DL VS +P+E ++ +G Sbjct: 50 SYSRQIVTLTYPHIGNVGVNREDVEATKVHAAGLIIKDLPILASNFRQEHSLSHYLKGEKVVAIAGIDTRKLTRILREKGAQNGCVLAGED--NPQKAIDLARSFPGLSGMDLAKVVSVTQPYEWNQTEWALG 180
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESMR (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=carA PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17 Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY GQ V MT PH+GN G+N +D ES +AG +++ SNWR TL YL + I GI +DTRA+TR LR G++ G +ST+ S Q ++ +++ + G+ L V PF Sbjct: 45 SYTGQMVCMTYPHVGNYGINPEDIESAHIRVAGFIVKECCKEPSNWRSTMTLPEYLTSQGITGIEGIDTRALTRHLRLHGAMRGYISTDVS-DPQRVVGLAKGLPSMEGLGLADRVCCDAPF 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XANAC (Carbamoyl-phosphate synthase small chain OS=Xanthomonas axonopodis pv. citri GN=carA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17 Identity = 47/127 (37.01%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381 SYA Q V +T PHIGNTG D+E+R+ + AGL++R + SNWR L +L R ++ IS +DTR +TR LRQ G+ G L + ++ L + + G+DL VS + + E + Sbjct: 47 SYARQMVTLTYPHIGNTGFTDQDDEARKIWAAGLIVRDVPRRPSNWRSQVALPEWLQARGVVAISGIDTRKLTRLLRQKGAQNGALMAGDIDVEKALEAARKFPGLKGMDLAKVVSTESTYNWKEGS 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_POLSQ (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=carA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17 Identity = 51/131 (38.93%), Postives = 74/131 (56.49%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGQEPFEMVE 375 SY Q V +T PHIGN GVN D ES + AGLVI+ L SN+R L YL E ++GI+ +DTR +TR LR G+ G + ++ D E LE+ +++ + G+DL V+ ++P+E E Sbjct: 53 SYCSQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVIKDLPKRVSNFRSEAPLDAYLTEAGVVGIAGIDTRKLTRILRDKGAQSGAIVAGKAGDDYETLGKKALELVKAFPGMAGLDLAKVVTTKKPYEWRE 183
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_COREF (Carbamoyl-phosphate synthase small chain OS=Corynebacterium efficiens GN=carA PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 3.105e-17 Identity = 50/126 (39.68%), Postives = 79/126 (62.70%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQ--CFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS-TEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY Q V+ T P IGNTG N +D ES ++AGLVIR L++ SNWR TL +A++ ++GI +DTRA+ R +R +G++ G+ S + + +EL+E+ +S +VG +L +VS +P+ Sbjct: 66 SYHRQIVVATAPQIGNTGWNEEDNESHDGSIWVAGLVIRDLAVRVSNWRATTTLQEEMAKQGVVGIGGIDTRALVRHIRNEGAVPAGIFSGADAERPIEELVEIVKSQPSMVGANLAVEVSVDKPY 191
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XYLFA (Carbamoyl-phosphate synthase small chain OS=Xylella fastidiosa GN=carA PE=3 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375 SYA Q V +T PHIGNTG D+E+ + + AGL++R + SNWR +L ++LA R ++ I+ +DTR +TR LR+ G+ G L E D+ + I G+DL VS ++ + E Sbjct: 47 SYAYQLVTLTYPHIGNTGCTDQDDEANKVWAAGLIVRDVPRRPSNWRSQISLSDWLAARGVVAIAGIDTRKLTRILREKGAQHGALMAGEIDVDRAQDAARQFTGIKGMDLAKVVSTKQAYSWYE 171 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |