FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LAWIP (Carbamoyl-phosphate synthase small chain OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=carA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V MT P IGN G+N +D ES +  ++ L+++      SNWR   +L  +L E NI GI  +DTRA+TR +R +G++ G++ST  +  +  +L + +   + G + ++ V+   P+
Sbjct:   45 SYYGQMVCMTWPLIGNYGINKEDMESEKIHVSALIVKECCRNPSNWRSETSLPKFLQEYNIAGIEGIDTRALTRHIRINGAMRGIISTSITDPNDLILRVKKVPSMEGQNYVTKVAPNSPW 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XANCP (Carbamoyl-phosphate synthase small chain OS=Xanthomonas campestris pv. campestris GN=carA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17
Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375
            SYA Q V +T PHIGNTG N  D+E++Q + AGL++R +    S+WR    L  +L  R ++ IS +DTR +TR LR+ G+  G L   E   ++ L    +   + G+DL   VS +  ++  E
Sbjct:   47 SYARQMVTLTYPHIGNTGFNDQDDEAKQVWAAGLIVRDVPRRPSSWRNQVALPAWLQTRGVVAISGIDTRKLTRLLREKGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKVVSTETTYQWQE 171          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THEMA (Carbamoyl-phosphate synthase small chain OS=Thermotoga maritima GN=carA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQE 357
            SY GQ V+MT P IG  GVN +D ES    +AG V+       SNWR   +  +YL + NI+ I  VDTRA+TR++R  G++ G +ST +   D  +  +  S  IVG DL   VS +E
Sbjct:   47 SYTGQIVVMTYPEIGIYGVNDEDVESDGIKVAGFVVYRSVDTPSNWRATMSFPDYLKKYNIVAIEGVDTRALTRKIRVKGAMKGAISTVDLDPDSLVKRVKESPSIVGRDLAGLVSPKE 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SHEON (Carbamoyl-phosphate synthase small chain OS=Shewanella oneidensis GN=carA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 44/122 (36.07%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY+ Q V +T PHIGNTG N +D ES      GL+IR L +  S++R  + L +YL   N++GI+D+DTR +TR LR+ G+  G +       + + L  ++++  + G+DL  +V+  + +
Sbjct:   51 SYSRQIVTLTYPHIGNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAY 172          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESAD (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=carA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17
Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQ 354
            SY GQ V MT P IGN G+  +D ES +  +A  +++      SNWR   +L  YL E  +MGI  +DTRA+TR LR +G++ G++STEE   ++ + +  +   + G +L   V+ +
Sbjct:   45 SYTGQMVCMTYPLIGNYGITKEDIESAKVHVAAFIVKECCKHPSNWRSVMSLPEYLKEAGVMGIEGIDTRALTRHLRINGAMRGIISTEELDPEKLVAKAKQLPTMEGQNLADTVTSE 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_OCEIH (Carbamoyl-phosphate synthase small chain OS=Oceanobacillus iheyensis GN=carA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR 306
            SY GQFV +T P IGN G+N DD E+   F+ GLV++  S   SN+R  ETL  +L   NI GI+++DTR +TR +R+ G++  V+  +E K++Q ++E  R
Sbjct:   46 SYCGQFVTLTYPLIGNYGINRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKHGTMRAVM-VDEQKNEQHVIEQLR 146          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HELHP (Carbamoyl-phosphate synthase small chain OS=Helicobacter hepaticus GN=carA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16
Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381
            SY+GQF++ + P IG  GVN  D ES +    G+++ S +   SN+R  ++L  YL E NIMGI  VDTR + + L   G+++ + ST+ ++  +    +SR+  I  I+ I +VS +  +   +ST
Sbjct:   49 SYSGQFIVFSMPEIGIVGVNNQDSESPRAACTGVILSSYNDFVSNFRSEQSLSTYLKEHNIMGICGVDTRNLIKMLTTQGAMMMIASTQITQESELKASLSRTPPIQDINFIKEVSTKTSYVHTDST 175          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RHOGE (Carbamoyl-phosphate synthase small chain OS=Rhodocyclus gelatinosus GN=carA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST-------EESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQIGI*H 402
            SY  Q V +T PHIGN GVN +D E+ +   AGLVI+ L +  SN+R A  L  YL     + I+ +DTR +TR LR  G+  G + +        E++    +     +  + G+DL   VS   P+E  E++ Q+G  H
Sbjct:   50 SYCRQIVTLTYPHIGNVGVNEEDVEAAKVHAAGLVIKDLPLRVSNFRAAMPLSQYLEREGTVAIAGIDTRRLTRVLRTTGAQNGCIVSFAPGTVVGEAEIAAAVAAAKAAPSMAGLDLAQVVSADAPYEWTETSWQLGRGH 190          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISMO (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes GN=carA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+L+  E+   +ELL   RS  +  +D + +VS  + F      K++
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFASNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETADKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISMF (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=carA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 49/130 (37.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ +  T P +GN GVN DD ES    + G+V+R  +   SNWR   TL  +L E+ I GI+ +DTR +T+ +R++G+L G+L+  E+ + +ELL   RS  +  +D + +VS  + F      K++
Sbjct:   46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETANKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_LAWIP4.055e-1735.54Carbamoyl-phosphate synthase small chain OS=Lawson... [more]
CARA_XANCP5.296e-1737.60Carbamoyl-phosphate synthase small chain OS=Xantho... [more]
CARA_THEMA6.917e-1742.02Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_SHEON6.917e-1736.07Carbamoyl-phosphate synthase small chain OS=Shewan... [more]
CARA_DESAD6.917e-1737.29Carbamoyl-phosphate synthase small chain OS=Desulf... [more]
CARA_OCEIH9.034e-1744.12Carbamoyl-phosphate synthase small chain OS=Oceano... [more]
CARA_HELHP1.180e-1635.43Carbamoyl-phosphate synthase small chain OS=Helico... [more]
CARA_RHOGE1.541e-1635.46Carbamoyl-phosphate synthase small chain OS=Rhodoc... [more]
CARA_LISMO1.541e-1637.69Carbamoyl-phosphate synthase small chain OS=Lister... [more]
CARA_LISMF2.013e-1637.69Carbamoyl-phosphate synthase small chain OS=Lister... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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