FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LAWIP (Carbamoyl-phosphate synthase small chain OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=carA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.055e-17 Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SY GQ V MT P IGN G+N +D ES + ++ L+++ SNWR +L +L E NI GI +DTRA+TR +R +G++ G++ST + + +L + + + G + ++ V+ P+ Sbjct: 45 SYYGQMVCMTWPLIGNYGINKEDMESEKIHVSALIVKECCRNPSNWRSETSLPKFLQEYNIAGIEGIDTRALTRHIRINGAMRGIISTSITDPNDLILRVKKVPSMEGQNYVTKVAPNSPW 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_XANCP (Carbamoyl-phosphate synthase small chain OS=Xanthomonas campestris pv. campestris GN=carA PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.296e-17 Identity = 47/125 (37.60%), Postives = 71/125 (56.80%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVE 375 SYA Q V +T PHIGNTG N D+E++Q + AGL++R + S+WR L +L R ++ IS +DTR +TR LR+ G+ G L E ++ L + + G+DL VS + ++ E Sbjct: 47 SYARQMVTLTYPHIGNTGFNDQDDEAKQVWAAGLIVRDVPRRPSSWRNQVALPAWLQTRGVVAISGIDTRKLTRLLREKGAQNGALMAGEIDVEKALEAARKFPGLKGMDLAKVVSTETTYQWQE 171
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THEMA (Carbamoyl-phosphate synthase small chain OS=Thermotoga maritima GN=carA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17 Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQE 357 SY GQ V+MT P IG GVN +D ES +AG V+ SNWR + +YL + NI+ I VDTRA+TR++R G++ G +ST + D + + S IVG DL VS +E Sbjct: 47 SYTGQIVVMTYPEIGIYGVNDEDVESDGIKVAGFVVYRSVDTPSNWRATMSFPDYLKKYNIVAIEGVDTRALTRKIRVKGAMKGAISTVDLDPDSLVKRVKESPSIVGRDLAGLVSPKE 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SHEON (Carbamoyl-phosphate synthase small chain OS=Shewanella oneidensis GN=carA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17 Identity = 44/122 (36.07%), Postives = 73/122 (59.84%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY+ Q V +T PHIGNTG N +D ES GL+IR L + S++R + L +YL N++GI+D+DTR +TR LR+ G+ G + + + L ++++ + G+DL +V+ + + Sbjct: 51 SYSRQIVTLTYPHIGNTGTNNEDVESNGVHACGLIIRDLPLIASSFRNQQNLSDYLKANNVVGIADIDTRKLTRILREKGAQAGCIMAGADLDEVKALAAAKAFPGLKGMDLAKEVTTDKAY 172
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_DESAD (Carbamoyl-phosphate synthase small chain OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=carA PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 6.917e-17 Identity = 44/118 (37.29%), Postives = 69/118 (58.47%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQ 354 SY GQ V MT P IGN G+ +D ES + +A +++ SNWR +L YL E +MGI +DTRA+TR LR +G++ G++STEE ++ + + + + G +L V+ + Sbjct: 45 SYTGQMVCMTYPLIGNYGITKEDIESAKVHVAAFIVKECCKHPSNWRSVMSLPEYLKEAGVMGIEGIDTRALTRHLRINGAMRGIISTEELDPEKLVAKAKQLPTMEGQNLADTVTSE 162
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_OCEIH (Carbamoyl-phosphate synthase small chain OS=Oceanobacillus iheyensis GN=carA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.034e-17 Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSR 306 SY GQFV +T P IGN G+N DD E+ F+ GLV++ S SN+R ETL +L NI GI+++DTR +TR +R+ G++ V+ +E K++Q ++E R Sbjct: 46 SYCGQFVTLTYPLIGNYGINRDDFETVTPFIHGLVVKEYSEFPSNFRNEETLDEFLQAHNIPGIANIDTRKLTRIIRKHGTMRAVM-VDEQKNEQHVIEQLR 146
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_HELHP (Carbamoyl-phosphate synthase small chain OS=Helicobacter hepaticus GN=carA PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.180e-16 Identity = 45/127 (35.43%), Postives = 74/127 (58.27%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381 SY+GQF++ + P IG GVN D ES + G+++ S + SN+R ++L YL E NIMGI VDTR + + L G+++ + ST+ ++ + +SR+ I I+ I +VS + + +ST Sbjct: 49 SYSGQFIVFSMPEIGIVGVNNQDSESPRAACTGVILSSYNDFVSNFRSEQSLSTYLKEHNIMGICGVDTRNLIKMLTTQGAMMMIASTQITQESELKASLSRTPPIQDINFIKEVSTKTSYVHTDST 175
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_RHOGE (Carbamoyl-phosphate synthase small chain OS=Rhodocyclus gelatinosus GN=carA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16 Identity = 50/141 (35.46%), Postives = 74/141 (52.48%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST-------EESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQIGI*H 402 SY Q V +T PHIGN GVN +D E+ + AGLVI+ L + SN+R A L YL + I+ +DTR +TR LR G+ G + + E++ + + + G+DL VS P+E E++ Q+G H Sbjct: 50 SYCRQIVTLTYPHIGNVGVNEEDVEAAKVHAAGLVIKDLPLRVSNFRAAMPLSQYLEREGTVAIAGIDTRRLTRVLRTTGAQNGCIVSFAPGTVVGEAEIAAAVAAAKAAPSMAGLDLAQVVSADAPYEWTETSWQLGRGH 190
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISMO (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes GN=carA PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16 Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ + T P +GN GVN DD ES + G+V+R + SNWR TL +L E+ I GI+ +DTR +T+ +R++G+L G+L+ E+ +ELL RS + +D + +VS + F K++ Sbjct: 46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFASNWRNQITLNEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETADKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LISMF (Carbamoyl-phosphate synthase small chain OS=Listeria monocytogenes serotype 4b (strain F2365) GN=carA PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16 Identity = 49/130 (37.69%), Postives = 77/130 (59.23%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ + T P +GN GVN DD ES + G+V+R + SNWR TL +L E+ I GI+ +DTR +T+ +R++G+L G+L+ E+ + +ELL RS + +D + +VS + F K++ Sbjct: 46 SYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDEFLKEKGIPGIAGIDTRKLTKLIRKEGTLKGILAA-ETANKEELLHHLRSVRL-PVDQVHEVSSAKAFASPGDGKRV 173 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |