FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLO (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum GN=carA PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15 Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVSGQEPF 363 SY Q V+ T PHIG+TGVN +D ES + ++AG ++R S SNWR +L + LA+ I+G+S +DTR + R LR G + G+ S T K+ ++LLE + + + G+ L +VS +E + Sbjct: 61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVSTKETY 191
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_MYCBO (Carbamoyl-phosphate synthase small chain OS=Mycobacterium bovis GN=carA PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15 Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGQEPF 363 SY Q V+ T P IGNTG N +D ESR + ++AG +R S SNWR TL + L + I+GI+ +DTR + R LR GS+ GV S +L+ R+ ++G DL +VS EP+ Sbjct: 46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRGVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEPY 170
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLI (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=carA PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15 Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363 SY Q V+ T PHIG+TGVN +D ES + ++AG ++R S SNWR +L + L + I+G+S +DTR + R LR G + G+ S T K+ ++LLE R+ + G+ L +VS +E + Sbjct: 61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLTKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVRNTPQMQGLSLYDEVSTKETY 191
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THEEB (Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) GN=carA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15 Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381 SY GQ V T P +GNTG +D+ES + + G V R++ SNWR ++L +YL I I +DTRA+TR++R G++ G +STE + L ++ + + G +L V+ + P+E E T Sbjct: 47 SYYGQIVTFTYPELGNTGTTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRTVGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTPYEWTEPT 173
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_GRATL (Carbamoyl-phosphate synthase small chain OS=Gracilaria tenuistipitata var. liui GN=carA PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15 Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFE 366 SYA Q + T P IGNTG+N +D ES + + G++ +++ +NWR E+ NY+ I I +DTRA+T+ LR+ GS+ G +S++ + I DL+ V+ + +E Sbjct: 50 SYAEQIITFTYPEIGNTGINHEDNESNKIHVKGIITKNICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNGCISSQYLNPYLLSTKFKDRLSIESSDLVKQVTTSKNYE 171
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_POLNS (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter necessarius (strain STIR1) GN=carA PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15 Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGQEPFEMVES 378 SY+ Q V +T PHIGN GVN D ES + AGLV++ L S++R L +YL + ++GI+ +DTR +TR LR G+ G + + E LE+++++ + G+DL V+ Q+ +E E+ Sbjct: 53 SYSRQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVVKDLPKRVSSFRSEGALDDYLTKAGVLGIAGIDTRKLTRILRDKGAQSGAIVAGKVGDSYETLVSKALELAKAFPGMSGLDLAKVVTTQKVYEWREA 184
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNR3 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain RCC307) GN=carA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY GQ + T P +GNTGVN +D E+ + ++ R L+ SNWR + TL +L + ++G+ +DTRA+ R+LR G++ G +ST+ + + L ++ + + G +L VS Sbjct: 45 SYTGQLITFTYPELGNTGVNQEDLEADTPAVKAVLCRCLAPQPSNWRSSGTLEQWLEQHGVVGLKGIDTRAVVRQLRDGGAINGAVSTDGTSPAELLKQVLAAPSMAGQNLAERVS 160
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLD (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum (strain DJO10A) GN=carA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVS 348 SY Q V+ T PHIG+TGVN +D ES + ++AG ++R S SNWR +L + LA+ I+G+S +DTR + R LR G + G+ S T K+ ++LLE + + + G+ L +VS Sbjct: 61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVS 186
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus halodurans GN=pyrAA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ V +T P IGN G+N DD ES + GL+++ SNWR E+L + L + I G+S +DTR +TR +R G+L G L + +Q + E+ + D +S VS ++P+ + K++ Sbjct: 45 SYCGQIVTLTYPLIGNYGINRDDFESMNPAIHGLIVKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLIRMHGTLKGQLCPLDVDVEQIVQELKAT--PTPTDQVSRVSTRDPYHVPGPGKRV 172
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACCL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus caldolyticus GN=pyrAA PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15 Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL 258 SY GQ V MT P IGN G+N DD E+ + + G +++ + SNWR TL YL E+ I G+S +DTR +TR +RQ G+L G++ Sbjct: 45 SYCGQIVTMTYPLIGNYGINRDDFEAIRPHVHGFIVKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLIRQYGTLKGMI 130 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |