FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLO (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum GN=carA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.305e-15
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVSGQEPF 363
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + LA+  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE +  +  + G+ L  +VS +E +
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVSTKETY 191          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_MYCBO (Carbamoyl-phosphate synthase small chain OS=Mycobacterium bovis GN=carA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.225e-15
Identity = 50/125 (40.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSRS-WDIVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   TL + L  + I+GI+ +DTR + R LR  GS+  GV S        +L+   R+   ++G DL  +VS  EP+
Sbjct:   46 SYHRQIVVATAPQIGNTGWNGEDSESRGERIWVAGYAVRDPSPRASNWRATGTLEDELIRQRIVGIAGIDTRGVVRHLRSRGSMKAGVFSDGALAEPADLIARVRAQQSMLGADLAGEVSTAEPY 170          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLI (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=carA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.906e-15
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPF 363
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + L +  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE  R+   + G+ L  +VS +E +
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLTKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVRNTPQMQGLSLYDEVSTKETY 191          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THEEB (Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) GN=carA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381
            SY GQ V  T P +GNTG   +D+ES +  + G V R++    SNWR  ++L +YL    I  I  +DTRA+TR++R  G++ G +STE     + L ++  +  + G +L   V+ + P+E  E T
Sbjct:   47 SYYGQIVTFTYPELGNTGTTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRTVGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTPYEWTEPT 173          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_GRATL (Carbamoyl-phosphate synthase small chain OS=Gracilaria tenuistipitata var. liui GN=carA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.796e-15
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFE 366
            SYA Q +  T P IGNTG+N +D ES +  + G++ +++    +NWR  E+  NY+    I  I  +DTRA+T+ LR+ GS+ G +S++         +      I   DL+  V+  + +E
Sbjct:   50 SYAEQIITFTYPEIGNTGINHEDNESNKIHVKGIITKNICFSPNNWRQQESFINYIFNNQIPHIFGIDTRALTKHLRKTGSMNGCISSQYLNPYLLSTKFKDRLSIESSDLVKQVTTSKNYE 171          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_POLNS (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter necessarius (strain STIR1) GN=carA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.957e-15
Identity = 47/132 (35.61%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVSGQEPFEMVES 378
            SY+ Q V +T PHIGN GVN  D ES +   AGLV++ L    S++R    L +YL +  ++GI+ +DTR +TR LR  G+  G +   +     E      LE+++++  + G+DL   V+ Q+ +E  E+
Sbjct:   53 SYSRQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVVKDLPKRVSSFRSEGALDDYLTKAGVLGIAGIDTRKLTRILRDKGAQSGAIVAGKVGDSYETLVSKALELAKAFPGMSGLDLAKVVTTQKVYEWREA 184          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYNR3 (Carbamoyl-phosphate synthase small chain OS=Synechococcus sp. (strain RCC307) GN=carA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 40/116 (34.48%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ +  T P +GNTGVN +D E+    +  ++ R L+   SNWR + TL  +L +  ++G+  +DTRA+ R+LR  G++ G +ST+ +   + L ++  +  + G +L   VS
Sbjct:   45 SYTGQLITFTYPELGNTGVNQEDLEADTPAVKAVLCRCLAPQPSNWRSSGTLEQWLEQHGVVGLKGIDTRAVVRQLRDGGAINGAVSTDGTSPAELLKQVLAAPSMAGQNLAERVS 160          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BIFLD (Carbamoyl-phosphate synthase small chain OS=Bifidobacterium longum (strain DJO10A) GN=carA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLS--------TEESKSDQELLE-MSRSWDIVGIDLISDVS 348
            SY  Q V+ T PHIG+TGVN +D ES + ++AG ++R  S   SNWR   +L + LA+  I+G+S +DTR + R LR  G +  G+ S        T   K+ ++LLE +  +  + G+ L  +VS
Sbjct:   61 SYDRQIVVQTFPHIGDTGVNSEDPESSRIWVAGYIVRDPSPNVSNWRAEGSLDDDLAKNGIVGLSHIDTRKLVRHLRSAGVMRAGIFSGDALTDQATGALKTIEQLLEDVKNTPQMQGLSLYDEVS 186          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACHD (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus halodurans GN=pyrAA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ V +T P IGN G+N DD ES    + GL+++      SNWR  E+L + L  + I G+S +DTR +TR +R  G+L G L   +   +Q + E+  +      D +S VS ++P+ +    K++
Sbjct:   45 SYCGQIVTLTYPLIGNYGINRDDFESMNPAIHGLIVKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLIRMHGTLKGQLCPLDVDVEQIVQELKAT--PTPTDQVSRVSTRDPYHVPGPGKRV 172          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACCL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Bacillus caldolyticus GN=pyrAA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.475e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL 258
            SY GQ V MT P IGN G+N DD E+ +  + G +++   +  SNWR   TL  YL E+ I G+S +DTR +TR +RQ G+L G++
Sbjct:   45 SYCGQIVTMTYPLIGNYGINRDDFEAIRPHVHGFIVKEACVKPSNWRGELTLDEYLKEKGIPGLSGIDTRKLTRLIRQYGTLKGMI 130          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_BIFLO1.305e-1537.40Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_MYCBO2.225e-1540.00Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_BIFLI2.906e-1537.40Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_THEEB3.796e-1536.22Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_GRATL3.796e-1532.79Carbamoyl-phosphate synthase small chain OS=Gracil... [more]
CARA_POLNS4.957e-1535.61Carbamoyl-phosphate synthase small chain OS=Polynu... [more]
CARA_SYNR36.475e-1534.48Carbamoyl-phosphate synthase small chain OS=Synech... [more]
CARA_BIFLD6.475e-1538.10Carbamoyl-phosphate synthase small chain OS=Bifido... [more]
CARA_BACHD6.475e-1535.38Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_BACCL6.475e-1545.35Carbamoyl-phosphate synthase pyrimidine-specific s... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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