FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..420. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_MYCPA (Carbamoyl-phosphate synthase small chain OS=Mycobacterium paratuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELLEMSR-SWDIVGIDLISDVSGQEPF 363
            SY  Q V+ T P IGNTG N +D ESR  + ++AG  +R  S   SNWR   +L + L  + I+GI+ +DTRA+ R LR  GS+  GV S +      EL++  R    ++G DL  +VS  + +
Sbjct:   47 SYHRQIVVATAPQIGNTGWNGEDAESRGDKIWVAGYAVRDPSPRVSNWRATGSLEDELIRQRIVGIARIDTRAVVRHLRTRGSMKAGVFSGDALADPDELVQRVRGQQSMLGADLAGEVSTPDAY 171          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BUCBP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=carA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 47/118 (39.83%), Postives = 67/118 (56.78%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWD--IVGIDLISDVS 348
            SY+ Q +  T PHIGN G+N +D ES      GL++R +S   SN R   +L NYL  + I+ IS++DTR +TR LR  GS  G ++T++  S   +L+     D  I   DL+  VS
Sbjct:   57 SYSNQIITFTYPHIGNVGINKNDCESNVIHAKGLIVRDISSIYSNHRSQMSLLNYLLNQKIIVISNIDTRKLTRILRTTGSQYGYITTKKIHSIINVLKHINILDNPITNKDLVKQVS 174          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACHK (Carbamoyl-phosphate synthase small chain OS=Bacillus thuringiensis subsp. konkukian GN=carA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS ++P+
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACCR (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=carA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS ++P+
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICNHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACC1 (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 10987) GN=carA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS ++P+
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACAN (Carbamoyl-phosphate synthase small chain OS=Bacillus anthracis GN=carA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.104e-14
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ERNI G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS ++P+
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERNIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_SYMTH (Carbamoyl-phosphate synthase small chain OS=Symbiobacterium thermophilum GN=carA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.884e-14
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST 264
            SY GQ V+MT P IGN GV   D ESRQ ++ GLV++ L    S+W+   +L +YLA   +  ++ +DTRA+TR LR  G++ GV++T
Sbjct:   39 SYYGQIVVMTYPLIGNYGVTAADGESRQPWIRGLVVKELCDRPSHWQAVGSLSDYLAGCGVPILAGLDTRALTRHLRSHGTMRGVIAT 126          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STAEQ (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=carA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.460e-14
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL   LA+ +I GIS VDTR+ITR++R  G L     T+   + QEL+E  ++ ++   D +  VS + P+
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNHGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTPY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THET8 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=carA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.213e-14
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGQEPF 363
            SY GQ V+MT PH GN GVN  D +S + ++ G V +  S   SN R  +T+G ++    ++GI  +DTRA+ R++R+ G L G ++        +    QE LE  R    +W DI G D+  +VS   P+
Sbjct:   50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLPY 181          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THET2 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=carA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.213e-14
Identity = 48/132 (36.36%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGQEPF 363
            SY GQ V+MT PH GN GVN  D +S + ++ G V +  S   SN R  +T+G ++    ++GI  +DTRA+ R++R+ G L G ++        +    QE LE  R    +W DI G D+  +VS   P+
Sbjct:   50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLPY 181          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_MYCPA1.104e-1439.20Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]
CARA_BUCBP1.104e-1439.83Carbamoyl-phosphate synthase small chain OS=Buchne... [more]
CARA_BACHK1.104e-1437.19Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_BACCR1.104e-1437.19Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_BACC11.104e-1437.19Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_BACAN1.104e-1437.19Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_SYMTH1.884e-1445.45Carbamoyl-phosphate synthase small chain OS=Symbio... [more]
CARA_STAEQ2.460e-1440.50Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_THET83.213e-1436.36Carbamoyl-phosphate synthase small chain OS=Thermu... [more]
CARA_THET23.213e-1436.36Carbamoyl-phosphate synthase small chain OS=Thermu... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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