FC876294

Overview
NameFC876294
Unique NameFC876294
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THETN (Carbamoyl-phosphate synthase small chain OS=Thermoanaerobacter tengcongensis GN=carA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 42/123 (34.15%), Postives = 77/123 (62.60%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEM 369
            SYAGQ V+MT P IGN G+N  D +S +  + G V+R      SN++  E+L +YL   NI  +S +DTRA+T++LR++G++ G++    + + ++ +E  ++      +L+ +VS ++P+ +
Sbjct:   45 SYAGQIVVMTYPLIGNYGINKYDFQSEKPHIRGFVVREYCDKPSNFQSEESLLSYLDNHNIPVLSGIDTRALTKKLRENGTMRGII----TYNPEDNIEFDQT------NLLEEVSTKKPYRI 157          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STAES (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 12228) GN=carA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14
Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ +  T P IGN G+N DD ES    L G+V++  S   SN+R  +TL   LA+ +I GIS VDTR+ITR++R  G L     T+   + QEL+E  ++ ++   D +  VS + P+
Sbjct:   47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNYGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTPY 165          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PORYE (Carbamoyl-phosphate synthase small chain OS=Porphyra yezoensis GN=carA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381
            SY  Q V  T P IGNTG+N  D ES    + GL+ +++   +S+WR  ++L  YL+  NI  I  +DTR++T+ LRQ G++ G +ST+         ++     + G+DLI  V+ +  +   E +
Sbjct:   51 SYFHQIVAFTYPEIGNTGINNQDIESHSISIKGLIAKNICKISSSWREQQSLVKYLSSNNIPFIFGIDTRSLTQYLRQFGTMNGCISTDNLNHSYLKQKICEIPSMQGLDLIPHVTTRNVYPWDEKS 177          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACCZ (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ZK / E33L) GN=carA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V  T P IGN G+N DD ES    + GL++  +    SN+R   +L +YL ER I G++ +DTR +TR++RQ G+L G L   ++  +  + ++  +   V  D +  VS ++P+
Sbjct:   45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERKIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_METTH (Carbamoyl-phosphate synthase small chain OS=Methanobacterium thermoautotrophicum GN=carA PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMS-RSWDIVGIDLISDVSGQEP 360
            SY GQ ++ T P  GN GV  +  +S      GL++R +    S+    +TL  +L E  I GI+ VDTRA+T ++R  G++ G L+TEE   D ELLEM+ +  DI  IDL+  V  +EP
Sbjct:   47 SYRGQILMPTYPLQGNYGVTEEWYQSDGIKAEGLIVREMCPAPSHSLSEKTLPEFLEEYGIPGIAGVDTRALTIKIRDKGTMKGALATEEI-DDDELLEMAVKQPDITEIDLVDMVCVREP 166          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_METKA (Carbamoyl-phosphate synthase small chain OS=Methanopyrus kandleri GN=carA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL---STEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQI 390
            SY GQ ++MT P  GN G+  +  ES +  + G V+R L  G  + R   TL  +L +  + GI+ VDTR +TR++R +G++ GVL     ++  SD+ELLE  R    I  +DL+  VS +E +   +   +I
Sbjct:   45 SYRGQILIMTFPMQGNYGILPEVGESDRVQVEGFVVRYLHDGPIHPRAEITLDEFLQDHGVPGIAGVDTRMLTRKIRTEGAMRGVLVPYEPDDQPSDEELLERVREVPHISEMDLVPQVSVREEYRFSDGKPEI 178          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LACPL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Lactobacillus plantarum GN=pyrAA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL 246
            SY G+ ++ T P IGN G+N DD ES +    G+V+  ++   SNWR A++L +YL +  I GI D+DTRA+T+ +R  G++
Sbjct:   45 SYNGEILMFTYPLIGNYGINRDDHESIKPTCKGVVVHEVARRASNWRNAQSLDDYLKQNAIPGIMDIDTRAVTKHIRTKGAM 126          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_FUSNN (Carbamoyl-phosphate synthase small chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309
            SY GQ V +T P IGN G+N DD ES +  + G+V++ +    SN+R  +TL   L +  I GI  +DTRA+TR+LR  G + G L + +   D+ + E+ ++
Sbjct:   46 SYNGQIVTLTYPLIGNYGINRDDFESMKPCIKGMVVKEVCATPSNFRSEKTLDEALKDFGIPGIYGIDTRALTRKLRSKGVVKGCLVSIDRNVDEVVAELKKT 148          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CHLTE (Carbamoyl-phosphate synthase small chain OS=Chlorobium tepidum GN=carA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363
            SY GQ V+MT P IGN G+  +D ES++ + + L++R  S   SN+    +L   L E  +MG++ +DTR + R +RQ G++  V+ST          + +   ++ G+DL+  V+  E +
Sbjct:   48 SYTGQMVVMTYPLIGNYGITPNDNESKKIWASALIVREASNVYSNYESTRSLDATLKEAGVMGLAGIDTRKLVREIRQKGAMRAVISTLCDDVAALKAQAAAIPEMTGLDLVQRVTTGERY 168          
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PORPU (Carbamoyl-phosphate synthase small chain OS=Porphyra purpurea GN=carA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY  Q V  T P IGNTG+N +D ES+   + GLV +++   +S+WR  E+L  YL    I  I  +DTR++T+ LR+ G++ G +S +         ++S    + G+DLI +V+
Sbjct:   51 SYFQQIVTFTYPEIGNTGINSEDIESQTISIKGLVAKNICKISSSWRQQESLVQYLNRYKIPFIFGIDTRSLTQYLRRSGTMNGCISNKNLNHAYLQRKISEVPHMTGLDLIPNVT 166          
The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CARA_THETN4.197e-1434.15Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_STAES4.197e-1440.50Carbamoyl-phosphate synthase small chain OS=Staphy... [more]
CARA_PORYE5.481e-1433.86Carbamoyl-phosphate synthase small chain OS=Porphy... [more]
CARA_BACCZ5.481e-1436.36Carbamoyl-phosphate synthase small chain OS=Bacill... [more]
CARA_METTH7.158e-1440.50Carbamoyl-phosphate synthase small chain OS=Methan... [more]
CARA_METKA7.158e-1435.82Carbamoyl-phosphate synthase small chain OS=Methan... [more]
CARA_LACPL9.349e-1442.68Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_FUSNN9.349e-1438.83Carbamoyl-phosphate synthase small chain OS=Fusoba... [more]
CARA_CHLTE1.221e-1333.06Carbamoyl-phosphate synthase small chain OS=Chloro... [more]
CARA_PORPU2.083e-1336.21Carbamoyl-phosphate synthase small chain OS=Porphy... [more]

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Properties
Property NameValue
Genbank descriptionC32003A07EF DevOvary1 Citrus clementina cDNA clone C32003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
GCAGGAACCTTTTGAAATGGTTGAGAGCACAAAACAGATTGGGATTTAAC
ACCATGAGAGAAACAGCAAC
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