FC876294
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_THETN (Carbamoyl-phosphate synthase small chain OS=Thermoanaerobacter tengcongensis GN=carA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14 Identity = 42/123 (34.15%), Postives = 77/123 (62.60%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEM 369 SYAGQ V+MT P IGN G+N D +S + + G V+R SN++ E+L +YL NI +S +DTRA+T++LR++G++ G++ + + ++ +E ++ +L+ +VS ++P+ + Sbjct: 45 SYAGQIVVMTYPLIGNYGINKYDFQSEKPHIRGFVVREYCDKPSNFQSEESLLSYLDNHNIPVLSGIDTRALTKKLRENGTMRGII----TYNPEDNIEFDQT------NLLEEVSTKKPYRI 157
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_STAES (Carbamoyl-phosphate synthase small chain OS=Staphylococcus epidermidis (strain ATCC 12228) GN=carA PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.197e-14 Identity = 49/121 (40.50%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SY GQ + T P IGN G+N DD ES L G+V++ S SN+R +TL LA+ +I GIS VDTR+ITR++R G L T+ + QEL+E ++ ++ D + VS + P+ Sbjct: 47 SYTGQIITFTYPLIGNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITRKIRNYGVLRAGF-TDNKDNIQELVEQLKTAELPR-DEVQTVSTKTPY 165
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PORYE (Carbamoyl-phosphate synthase small chain OS=Porphyra yezoensis GN=carA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14 Identity = 43/127 (33.86%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPFEMVEST 381 SY Q V T P IGNTG+N D ES + GL+ +++ +S+WR ++L YL+ NI I +DTR++T+ LRQ G++ G +ST+ ++ + G+DLI V+ + + E + Sbjct: 51 SYFHQIVAFTYPEIGNTGINNQDIESHSISIKGLIAKNICKISSSWREQQSLVKYLSSNNIPFIFGIDTRSLTQYLRQFGTMNGCISTDNLNHSYLKQKICEIPSMQGLDLIPHVTTRNVYPWDEKS 177
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_BACCZ (Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ZK / E33L) GN=carA PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14 Identity = 44/121 (36.36%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SY GQ V T P IGN G+N DD ES + GL++ + SN+R +L +YL ER I G++ +DTR +TR++RQ G+L G L ++ + + ++ + V D + VS ++P+ Sbjct: 45 SYCGQIVTFTYPLIGNYGINRDDFESIHPSVNGLIVNEICDHPSNFRNEISLNDYLKERKIPGLAGIDTRKLTRKIRQYGTLRGRLCNMDADVEYIVSQLKAT---VFTDHVKRVSTKDPY 162
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_METTH (Carbamoyl-phosphate synthase small chain OS=Methanobacterium thermoautotrophicum GN=carA PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMS-RSWDIVGIDLISDVSGQEP 360 SY GQ ++ T P GN GV + +S GL++R + S+ +TL +L E I GI+ VDTRA+T ++R G++ G L+TEE D ELLEM+ + DI IDL+ V +EP Sbjct: 47 SYRGQILMPTYPLQGNYGVTEEWYQSDGIKAEGLIVREMCPAPSHSLSEKTLPEFLEEYGIPGIAGVDTRALTIKIRDKGTMKGALATEEI-DDDELLEMAVKQPDITEIDLVDMVCVREP 166
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_METKA (Carbamoyl-phosphate synthase small chain OS=Methanopyrus kandleri GN=carA PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14 Identity = 48/134 (35.82%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVL---STEESKSDQELLEMSRSW-DIVGIDLISDVSGQEPFEMVESTKQI 390 SY GQ ++MT P GN G+ + ES + + G V+R L G + R TL +L + + GI+ VDTR +TR++R +G++ GVL ++ SD+ELLE R I +DL+ VS +E + + +I Sbjct: 45 SYRGQILIMTFPMQGNYGILPEVGESDRVQVEGFVVRYLHDGPIHPRAEITLDEFLQDHGVPGIAGVDTRMLTRKIRTEGAMRGVLVPYEPDDQPSDEELLERVREVPHISEMDLVPQVSVREEYRFSDGKPEI 178
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_LACPL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Lactobacillus plantarum GN=pyrAA PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14 Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL 246 SY G+ ++ T P IGN G+N DD ES + G+V+ ++ SNWR A++L +YL + I GI D+DTRA+T+ +R G++ Sbjct: 45 SYNGEILMFTYPLIGNYGINRDDHESIKPTCKGVVVHEVARRASNWRNAQSLDDYLKQNAIPGIMDIDTRAVTKHIRTKGAM 126
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_FUSNN (Carbamoyl-phosphate synthase small chain OS=Fusobacterium nucleatum subsp. nucleatum GN=carA PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.349e-14 Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRS 309 SY GQ V +T P IGN G+N DD ES + + G+V++ + SN+R +TL L + I GI +DTRA+TR+LR G + G L + + D+ + E+ ++ Sbjct: 46 SYNGQIVTLTYPLIGNYGINRDDFESMKPCIKGMVVKEVCATPSNFRSEKTLDEALKDFGIPGIYGIDTRALTRKLRSKGVVKGCLVSIDRNVDEVVAELKKT 148
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_CHLTE (Carbamoyl-phosphate synthase small chain OS=Chlorobium tepidum GN=carA PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.221e-13 Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGQEPF 363 SY GQ V+MT P IGN G+ +D ES++ + + L++R S SN+ +L L E +MG++ +DTR + R +RQ G++ V+ST + + ++ G+DL+ V+ E + Sbjct: 48 SYTGQMVVMTYPLIGNYGITPNDNESKKIWASALIVREASNVYSNYESTRSLDATLKEAGVMGLAGIDTRKLVREIRQKGAMRAVISTLCDDVAALKAQAAAIPEMTGLDLVQRVTTGERY 168
BLAST of FC876294 vs. ExPASy Swiss-Prot
Match: CARA_PORPU (Carbamoyl-phosphate synthase small chain OS=Porphyra purpurea GN=carA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13 Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY Q V T P IGNTG+N +D ES+ + GLV +++ +S+WR E+L YL I I +DTR++T+ LR+ G++ G +S + ++S + G+DLI +V+ Sbjct: 51 SYFQQIVTFTYPEIGNTGINSEDIESQTISIKGLVAKNICKISSSWRQQESLVQYLNRYKIPFIFGIDTRSLTQYLRRSGTMNGCISNKNLNHAYLQRKISEVPHMTGLDLIPNVT 166 The following BLAST results are available for this feature:
BLAST of FC876294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 139
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876294 ID=FC876294; Name=FC876294; organism=Citrus clementina; type=EST; length=420bpback to top |