FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRPN (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae GN=carA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354
            SY GQ +  T P +GN G+N DD ES      G+V+   +   SNWR   TL  +L  + I GIS +DTRA+T+ +R+ G++   L+      D    ++  +  ++  D I  VS K
Sbjct:   46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLTHVGDSMDHVTDQLQAT--VLPTDNIKQVSTK 161          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHILO (Carbamoyl-phosphate synthase small chain OS=Rhizobium loti GN=carA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSWD-IVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G V ++     SN+R A  L  +L +R I+ +S +DTRA+T  +R+ G    V++   +   D  +L + + +W  ++G+DL  +V+
Sbjct:   54 SYAGQIVTFTFPHIGNIGTNGEDIEDLNPAARAGAVGAVFKADVTNPSNYRAAGHLDQWLKKRGIVALSGIDTRALTALIREKGMPNAVIAHAPDGVFDLDDLKQRAAAWSGLIGLDLAKEVT 176          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRAJA (Carbamoyl-phosphate synthase small chain OS=Bradyrhizobium japonicum GN=carA PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11
Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSW-DIVGIDLISDVS 348
            SYAGQ +  T PHIGN G N +D E+          G+++R+     SN+R  + L  +L  R I+G+S +DTRA+T  +R  G    V++     + D   L E +R W  + G+DL+  V+
Sbjct:   59 SYAGQLITFTFPHIGNVGTNEEDIETVNMAATPGARGVILRTAITDPSNYRATKHLDAWLKARGIIGLSGIDTRALTALIRSKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVT 181          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: PYR1_SCHPO (Protein ura1 OS=Schizosaccharomyces pombe GN=ura1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGV---NFDDE--------ESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS---DQELLEMSRSWDIVGID----------LISDVSGKEP 360
            SY GQ ++ T P +GN GV      DE        ES Q  +A ++I S S   S++    +LG +L E+ I GI  +DTRA+T+++R  GS++G L  ++ +S      +  + + W     D          L S VS KEP
Sbjct:  101 SYRGQILVFTFPTVGNYGVPDRRILDEISGLPKYFESNQIHVAAIIISSYSQNYSHFLAHSSLGEWLKEQGIPGIFGIDTRALTKKIRDQGSMLGRLLIQKDESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQVSIKEP 244          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELPJ (Carbamoyl-phosphate synthase small chain OS=Helicobacter pylori J99 GN=carA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR-QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQFV+ + P IG  G N  D+ES   C  AG++ R  +   SN R   +L  YL +R ++GIS VDTR++ + LR  G L+ + ST E   ++    +  +  I    L+S VS
Sbjct:   44 SYKGQFVVFSMPEIGVVGANPKDDESFFSC--AGVLARHYNEFFSNSRADSSLSTYLKKRGVLGISGVDTRSLIKTLRHHGCLMMIASTIEHDRNKLEEVLKNAPKISHSPLVSSVS 158          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: PYR1_YEAST (Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 PE=1 SV=4)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGV---NFDDE---------ESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW 312
            SY GQ +++T P +GN GV   +  DE         ES +  +AGLVI   +   S++    +LG +L    I  +  VDTR++T+ LR  GS++G LS E+S SD+  +  S SW
Sbjct:   64 SYEGQILVITYPLVGNYGVPDMHLRDELVEELPRYFESNRIHIAGLVISHYTDEYSHYLRKSSLGKWLQNEGIPAVYGVDTRSLTKHLRDAGSMLGRLSLEKSGSDR-TISRSSSW 178          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELAH (Carbamoyl-phosphate synthase small chain OS=Helicobacter acinonychis (strain Sheeba) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEE 270
            SY GQFV+ + P IG  G N  D+ES     AG+++R  +   SN R   +L  YL ER ++GI  VDTR++ + LR  G L+ V ST E
Sbjct:   44 SYKGQFVIFSMPEIGVVGANSKDDESFFSS-AGILVRHYNEFFSNSRADFSLSAYLKERGVLGICGVDTRSLIKTLRHHGCLMMVASTIE 132          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUSU (Carbamoyl-phosphate synthase small chain OS=Brucella suis GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUSI (Carbamoyl-phosphate synthase small chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUC2 (Carbamoyl-phosphate synthase small chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=carA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348
            SYAGQ V  T PHIGN G N +D E    + +    G + ++     SN+R AE L ++L  R I+ ++ +DTRA+T  +R+ G+   V++ + + + D + L+  + +W  +  +DL  DV+
Sbjct:   60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_STRPN4.393e-1134.75Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_RHILO4.393e-1134.15Carbamoyl-phosphate synthase small chain OS=Rhizob... [more]
CARA_BRAJA4.393e-1134.96Carbamoyl-phosphate synthase small chain OS=Bradyr... [more]
PYR1_SCHPO7.494e-1132.64Protein ura1 OS=Schizosaccharomyces pombe GN=ura1 ... [more]
CARA_HELPJ7.494e-1137.61Carbamoyl-phosphate synthase small chain OS=Helico... [more]
PYR1_YEAST9.787e-1137.07Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 P... [more]
CARA_HELAH9.787e-1143.33Carbamoyl-phosphate synthase small chain OS=Helico... [more]
CARA_BRUSU9.787e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]
CARA_BRUSI9.787e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]
CARA_BRUC29.787e-1133.33Carbamoyl-phosphate synthase small chain OS=Brucel... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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