FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRPN (Carbamoyl-phosphate synthase small chain OS=Streptococcus pneumoniae GN=carA PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11 Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGK 354 SY GQ + T P +GN G+N DD ES G+V+ + SNWR TL +L + I GIS +DTRA+T+ +R+ G++ L+ D ++ + ++ D I VS K Sbjct: 46 SYNGQILTFTYPLVGNYGINRDDYESIIPTCKGVVVFEEARRASNWRNQMTLDEFLKAKKIPGISGIDTRALTKIIRKHGTMRATLTHVGDSMDHVTDQLQAT--VLPTDNIKQVSTK 161
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHILO (Carbamoyl-phosphate synthase small chain OS=Rhizobium loti GN=carA PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11 Identity = 42/123 (34.15%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSWD-IVGIDLISDVS 348 SYAGQ V T PHIGN G N +D E + + G V ++ SN+R A L +L +R I+ +S +DTRA+T +R+ G V++ + D +L + + +W ++G+DL +V+ Sbjct: 54 SYAGQIVTFTFPHIGNIGTNGEDIEDLNPAARAGAVGAVFKADVTNPSNYRAAGHLDQWLKKRGIVALSGIDTRALTALIREKGMPNAVIAHAPDGVFDLDDLKQRAAAWSGLIGLDLAKEVT 176
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRAJA (Carbamoyl-phosphate synthase small chain OS=Bradyrhizobium japonicum GN=carA PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.393e-11 Identity = 43/123 (34.96%), Postives = 66/123 (53.66%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLA----GLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS-TEESKSD-QELLEMSRSW-DIVGIDLISDVS 348 SYAGQ + T PHIGN G N +D E+ G+++R+ SN+R + L +L R I+G+S +DTRA+T +R G V++ + D L E +R W + G+DL+ V+ Sbjct: 59 SYAGQLITFTFPHIGNVGTNEEDIETVNMAATPGARGVILRTAITDPSNYRATKHLDAWLKARGIIGLSGIDTRALTALIRSKGMPNAVIAHARNGEFDLHGLKEEAREWPGLEGMDLVPMVT 181
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: PYR1_SCHPO (Protein ura1 OS=Schizosaccharomyces pombe GN=ura1 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11 Identity = 47/144 (32.64%), Postives = 71/144 (49.31%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGV---NFDDE--------ESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS---DQELLEMSRSWDIVGID----------LISDVSGKEP 360 SY GQ ++ T P +GN GV DE ES Q +A ++I S S S++ +LG +L E+ I GI +DTRA+T+++R GS++G L ++ +S + + + W D L S VS KEP Sbjct: 101 SYRGQILVFTFPTVGNYGVPDRRILDEISGLPKYFESNQIHVAAIIISSYSQNYSHFLAHSSLGEWLKEQGIPGIFGIDTRALTKKIRDQGSMLGRLLIQKDESPINPSSITGLGKDWSTAFEDIPWKNPNTENLTSQVSIKEP 244
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELPJ (Carbamoyl-phosphate synthase small chain OS=Helicobacter pylori J99 GN=carA PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11 Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESR-QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY GQFV+ + P IG G N D+ES C AG++ R + SN R +L YL +R ++GIS VDTR++ + LR G L+ + ST E ++ + + I L+S VS Sbjct: 44 SYKGQFVVFSMPEIGVVGANPKDDESFFSC--AGVLARHYNEFFSNSRADSSLSTYLKKRGVLGISGVDTRSLIKTLRHHGCLMMIASTIEHDRNKLEEVLKNAPKISHSPLVSSVS 158
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: PYR1_YEAST (Protein URA1 OS=Saccharomyces cerevisiae GN=URA2 PE=1 SV=4) HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGV---NFDDE---------ESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW 312 SY GQ +++T P +GN GV + DE ES + +AGLVI + S++ +LG +L I + VDTR++T+ LR GS++G LS E+S SD+ + S SW Sbjct: 64 SYEGQILVITYPLVGNYGVPDMHLRDELVEELPRYFESNRIHIAGLVISHYTDEYSHYLRKSSLGKWLQNEGIPAVYGVDTRSLTKHLRDAGSMLGRLSLEKSGSDR-TISRSSSW 178
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HELAH (Carbamoyl-phosphate synthase small chain OS=Helicobacter acinonychis (strain Sheeba) GN=carA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11 Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEE 270 SY GQFV+ + P IG G N D+ES AG+++R + SN R +L YL ER ++GI VDTR++ + LR G L+ V ST E Sbjct: 44 SYKGQFVIFSMPEIGVVGANSKDDESFFSS-AGILVRHYNEFFSNSRADFSLSAYLKERGVLGICGVDTRSLIKTLRHHGCLMMVASTIE 132
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUSU (Carbamoyl-phosphate synthase small chain OS=Brucella suis GN=carA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11 Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348 SYAGQ V T PHIGN G N +D E + + G + ++ SN+R AE L ++L R I+ ++ +DTRA+T +R+ G+ V++ + + + D + L+ + +W + +DL DV+ Sbjct: 60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUSI (Carbamoyl-phosphate synthase small chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=carA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11 Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348 SYAGQ V T PHIGN G N +D E + + G + ++ SN+R AE L ++L R I+ ++ +DTRA+T +R+ G+ V++ + + + D + L+ + +W + +DL DV+ Sbjct: 60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BRUC2 (Carbamoyl-phosphate synthase small chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=carA PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11 Identity = 41/123 (33.33%), Postives = 70/123 (56.91%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEE----SRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKS-DQELLE-MSRSW-DIVGIDLISDVS 348 SYAGQ V T PHIGN G N +D E + + G + ++ SN+R AE L ++L R I+ ++ +DTRA+T +R+ G+ V++ + + + D + L+ + +W + +DL DV+ Sbjct: 60 SYAGQIVTFTFPHIGNVGANAEDIEDLTPANRHGAVGAIFKADITAPSNFRAAEDLDSWLKHRGIIALAGIDTRALTALIRERGAQNAVIAHDPNGNFDLDALKARAANWCGLENLDLAKDVT 182 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |