FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBVY (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus (strain YJ016) GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGNTG   +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ KE
Sbjct:   47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBVU (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGNTG   +DEES      GLVIR L +  SN+R  ++L +YL  +NI+GI+D+DTR +TR LR+ G+  G +    +  +   L  ++ +  + G+DL  +V+ KE
Sbjct:   47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCAP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=carA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19
Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGK 354
            SY+ Q V +T+PHIGN G N +DEES +  + GL+IR +S  +SN+R  ++  +YL E NI+ ISD+DTR +TR LR  GS  G +  ++ ++     + ++ +  + G+DL   VS K
Sbjct:   51 SYSHQIVTLTHPHIGNIGTNCNDEESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAISDIDTRKLTRILRTKGSQNGCIIEDKKENYSVAYQKAKKFLSLQGLDLAKKVSTK 169          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SALTY (Carbamoyl-phosphate synthase small chain OS=Salmonella typhimurium GN=carA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   +S   +  LE ++++  + G+DL  +V+  E
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SALTI (Carbamoyl-phosphate synthase small chain OS=Salmonella typhi GN=carA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18
Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   +S   +  LE ++++  + G+DL  +V+  E
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRCO (Carbamoyl-phosphate synthase small chain OS=Streptomyces coelicolor GN=carA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 48/121 (39.67%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGKE 357
            SY  Q V+MT PH+GNTG+N +D ESR+ +++G V+R  +   SNWR   +L   LA + ++GIS +DTRA+TR LR+ G++ +G+ S      +  +L E+ ++ ++ G DL ++V+  E
Sbjct:   55 SYHRQVVVMTAPHVGNTGINDEDMESRRIWVSGYVVRDPARVPSNWRSTRSLDQELAAQGVVGISGIDTRALTRHLRERGAMRVGIFSGNALPDEGTMLAEVRQTPEMSGADLSAEVATTE 175          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEAE (Carbamoyl-phosphate synthase small chain OS=Pseudomonas aeruginosa GN=carA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTG   +D E+ + + AGL+IR L +  SNWR  ++L +YL     + I+ +DTR +TR LR+ GS  G +      +++  LE++R++  + G+DL  +V+  E
Sbjct:   47 SYAQQIVTLTYPHIGNTGTTPEDAEANRVWAAGLIIRDLPLIASNWRSKQSLPDYLKANGTVAIAGIDTRRLTRILREKGSQNGCILAGADATEERALELARAFPGLKGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HAEDU (Carbamoyl-phosphate synthase small chain OS=Haemophilus ducreyi GN=carA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRS-----WDIVGIDLISDVS 348
            SYA Q V +T PHIGNTG N +D ES Q + +GL+IR L +  SN+R   +L +YL + NI+ I+D+DTR +TR LR+ GS  G +    E++S  + +E ++        + G DL  +V+
Sbjct:   50 SYAKQIVTLTYPHIGNTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNIIAIADIDTRRLTRILRETGSQAGCIYIPNENESLAQAVEKAQDLAKSFGSMAGKDLAKEVT 171          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ANASP (Carbamoyl-phosphate synthase small chain OS=Anabaena sp. (strain PCC 7120) GN=carA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY GQ V+ T P +GNTGVN +DEES +  + G + R++    SNWR  ++L +YL + +I GI  +DTRA+TR++R  G++ G +STE     + L ++  + ++ G++L+ +V+
Sbjct:   51 SYRGQIVVFTYPELGNTGVNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRMYGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVT 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_YERPS (Carbamoyl-phosphate synthase small chain OS=Yersinia pseudotuberculosis GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES      GLVIR L +  SN+R  E L  YL   NI+ I+D+DTR +TR LR+ G+  G +   E       LE ++++  + G+DL  +V+ KE
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKE 166          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_VIBVY9.764e-1940.83Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]
CARA_VIBVU9.764e-1940.83Carbamoyl-phosphate synthase small chain OS=Vibrio... [more]
CARA_BUCAP9.764e-1940.34Carbamoyl-phosphate synthase small chain OS=Buchne... [more]
CARA_SALTY1.275e-1842.50Carbamoyl-phosphate synthase small chain OS=Salmon... [more]
CARA_SALTI1.275e-1842.50Carbamoyl-phosphate synthase small chain OS=Salmon... [more]
CARA_STRCO1.666e-1839.67Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_PSEAE1.666e-1839.17Carbamoyl-phosphate synthase small chain OS=Pseudo... [more]
CARA_HAEDU1.666e-1840.98Carbamoyl-phosphate synthase small chain OS=Haemop... [more]
CARA_ANASP1.666e-1838.79Carbamoyl-phosphate synthase small chain OS=Anabae... [more]
CARA_YERPS2.175e-1842.50Carbamoyl-phosphate synthase small chain OS=Yersin... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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