FC876295
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBVY (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus (strain YJ016) GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGNTG +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ KE Sbjct: 47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_VIBVU (Carbamoyl-phosphate synthase small chain OS=Vibrio vulnificus GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19 Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGNTG +DEES GLVIR L + SN+R ++L +YL +NI+GI+D+DTR +TR LR+ G+ G + + + L ++ + + G+DL +V+ KE Sbjct: 47 SYSQQIVTLTYPHIGNTGTTSEDEESSSIHAQGLVIRDLPLIASNFRSEQSLSDYLKSQNIVGIADIDTRKLTRILREKGAQNGCIVAGNNLDEALALAKAKEFPGLKGMDLAKEVTTKE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_BUCAP (Carbamoyl-phosphate synthase small chain OS=Buchnera aphidicola subsp. Schizaphis graminum GN=carA PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.764e-19 Identity = 48/119 (40.34%), Postives = 75/119 (63.03%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGK 354 SY+ Q V +T+PHIGN G N +DEES + + GL+IR +S +SN+R ++ +YL E NI+ ISD+DTR +TR LR GS G + ++ ++ + ++ + + G+DL VS K Sbjct: 51 SYSHQIVTLTHPHIGNIGTNCNDEESSKIHIRGLIIRDMSPISSNYRSEKSFSSYLKENNIVAISDIDTRKLTRILRTKGSQNGCIIEDKKENYSVAYQKAKKFLSLQGLDLAKKVSTK 169
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SALTY (Carbamoyl-phosphate synthase small chain OS=Salmonella typhimurium GN=carA PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18 Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + +S + LE ++++ + G+DL +V+ E Sbjct: 47 SYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_SALTI (Carbamoyl-phosphate synthase small chain OS=Salmonella typhi GN=carA PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.275e-18 Identity = 51/120 (42.50%), Postives = 73/120 (60.83%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES Q GLVIR L + SN+R E L +YL NI+ I+D+DTR +TR LR+ G+ G + +S + LE ++++ + G+DL +V+ E Sbjct: 47 SYSRQIVTLTYPHIGNVGTNEADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRCO (Carbamoyl-phosphate synthase small chain OS=Streptomyces coelicolor GN=carA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 48/121 (39.67%), Postives = 79/121 (65.29%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGKE 357 SY Q V+MT PH+GNTG+N +D ESR+ +++G V+R + SNWR +L LA + ++GIS +DTRA+TR LR+ G++ +G+ S + +L E+ ++ ++ G DL ++V+ E Sbjct: 55 SYHRQVVVMTAPHVGNTGINDEDMESRRIWVSGYVVRDPARVPSNWRSTRSLDQELAAQGVVGISGIDTRALTRHLRERGAMRVGIFSGNALPDEGTMLAEVRQTPEMSGADLSAEVATTE 175
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PSEAE (Carbamoyl-phosphate synthase small chain OS=Pseudomonas aeruginosa GN=carA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 47/120 (39.17%), Postives = 74/120 (61.67%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SYA Q V +T PHIGNTG +D E+ + + AGL+IR L + SNWR ++L +YL + I+ +DTR +TR LR+ GS G + +++ LE++R++ + G+DL +V+ E Sbjct: 47 SYAQQIVTLTYPHIGNTGTTPEDAEANRVWAAGLIIRDLPLIASNWRSKQSLPDYLKANGTVAIAGIDTRRLTRILREKGSQNGCILAGADATEERALELARAFPGLKGMDLAKEVTTAE 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_HAEDU (Carbamoyl-phosphate synthase small chain OS=Haemophilus ducreyi GN=carA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 50/122 (40.98%), Postives = 75/122 (61.48%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIG-VLSTEESKSDQELLEMSRS-----WDIVGIDLISDVS 348 SYA Q V +T PHIGNTG N +D ES Q + +GL+IR L + SN+R +L +YL + NI+ I+D+DTR +TR LR+ GS G + E++S + +E ++ + G DL +V+ Sbjct: 50 SYAKQIVTLTYPHIGNTGTNDEDNESNQIYASGLIIRDLPLLHSNFRATSSLSDYLIQHNIIAIADIDTRRLTRILRETGSQAGCIYIPNENESLAQAVEKAQDLAKSFGSMAGKDLAKEVT 171
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ANASP (Carbamoyl-phosphate synthase small chain OS=Anabaena sp. (strain PCC 7120) GN=carA PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18 Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348 SY GQ V+ T P +GNTGVN +DEES + + G + R++ SNWR ++L +YL + +I GI +DTRA+TR++R G++ G +STE + L ++ + ++ G++L+ +V+ Sbjct: 51 SYRGQIVVFTYPELGNTGVNPEDEESARPQVRGAIARNICHKPSNWRSTQSLPDYLKQHHIPGIFGIDTRALTRKIRMYGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVT 166
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_YERPS (Carbamoyl-phosphate synthase small chain OS=Yersinia pseudotuberculosis GN=carA PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18 Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1 Query: 1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357 SY+ Q V +T PHIGN G N DEES GLVIR L + SN+R E L YL NI+ I+D+DTR +TR LR+ G+ G + E LE ++++ + G+DL +V+ KE Sbjct: 47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKE 166 The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 140
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bpback to top |