FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_YERPE (Carbamoyl-phosphate synthase small chain OS=Yersinia pestis GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES      GLVIR L +  SN+R  E L  YL   NI+ I+D+DTR +TR LR+ G+  G +   E       LE ++++  + G+DL  +V+ KE
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNASDEESSAVHAQGLVIRDLPLIASNYRNEEGLSEYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIVGELSDAALALEKAKAFPGLKGMDLAKEVTTKE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHOBA (Carbamoyl-phosphate synthase small chain OS=Rhodopirellula baltica GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 48/115 (41.74%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDV 345
            SY GQ V MT P +GN G+N  D E+R   LAG +IR+ S   SN+R   +L +YL  + ++GI+ +DTRA+ RR+R +G++ GVLST +      + +   S  +VG DL+ +V
Sbjct:   51 SYRGQLVTMTYPEMGNYGINSIDLENRGTSLAGFIIRNESRMHSNYRSEGSLSDYLNSQGVVGIAGIDTRALVRRIRSEGAMRGVLSTTDLDDASLVAKAKASPGLVGRDLVQEV 165          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECOLI (Carbamoyl-phosphate synthase small chain OS=Escherichia coli (strain K12) GN=carA PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ECO57 (Carbamoyl-phosphate synthase small chain OS=Escherichia coli O157:H7 GN=carA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N  DEES Q    GLVIR L +  SN+R  E L +YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE +R++  + G+DL  +V+  E
Sbjct:   47 SYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_STRAW (Carbamoyl-phosphate synthase small chain OS=Streptomyces avermitilis GN=carA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.841e-18
Identity = 47/121 (38.84%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTEESKSDQELL-EMSRSWDIVGIDLISDVSGKE 357
            SY  Q V+MT PH+GNTGVN +D ES++ +++G V+R  +   SNWR   +L   L  + ++GIS +DTRA+TR LR+ G++ +G+ S      +  +L E+ ++ ++ G +L ++V+ KE
Sbjct:   55 SYHRQVVVMTAPHVGNTGVNDEDPESKRIWVSGYVVRDPARVPSNWRSRRSLDEELRHQGVVGISGIDTRALTRHLRESGAMRVGIFSGSALPDEGTMLAEVRQAPEMKGANLAAEVATKE 175          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THISH (Carbamoyl-phosphate synthase small chain OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=carA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.710e-18
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SYA Q V +T PHIGNTGVN +DEES     AGLVIR L    S+WR  E+L +YL    ++ I+++DTR +TR LR+ G+  G +   E   +Q  L  +R +  + G+DL  +VS  E
Sbjct:   48 SYARQIVTLTYPHIGNTGVNPEDEESAGVHAAGLVIRDLPPLVSSWRSRESLPDYLTRFGVVAIANIDTRRLTRILREKGAQNGCIMAGEI-DEQAALAAARGFPGLKGMDLAKEVSTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PHOPR (Carbamoyl-phosphate synthase small chain OS=Photobacterium profundum GN=carA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 48/120 (40.00%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGNTG N +DEES      GLVIR L +  SN+R   +L +YL  +NI+GI+++DTR +TR LR+ G+  G +   ++  +   L+ ++ +  + G+DL   V+  E
Sbjct:   47 SYSQQIVTLTYPHIGNTGTNSEDEESNSIHAQGLVIRDLPLLASNFRNERSLSDYLKSQNIVGIAEIDTRKLTRILREKGAQNGCIMAGDNLDEALALDKAKEFPGLKGMDLAKVVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_ERWCT (Carbamoyl-phosphate synthase small chain OS=Erwinia carotovora subsp. atroseptica GN=carA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY+ Q V +T PHIGN G N +DEES      GLVIR L +  SN+R  E+L  YL   NI+ I+D+DTR +TR LR+ G+  G +   ++      LE ++++  + G+DL  +V+  E
Sbjct:   47 SYSRQIVTLTYPHIGNVGANANDEESPSVQAQGLVIRDLPLIASNYRSEESLSEYLKRNNIVAIADIDTRKLTRLLREKGAQNGCIIAGDAPDAVVALEKAKAFPGLKGMDLAKEVTTAE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CAMJE (Carbamoyl-phosphate synthase small chain OS=Campylobacter jejuni GN=carA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.846e-18
Identity = 44/119 (36.97%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SYAGQF++ + P IG  G N +D ES++ F +G+++R LS   SN+R  E+L +YL +   +GI ++DTR + + +R +G+L  V+STE S  +   + + +S  I  ++ + +VS K+
Sbjct:   45 SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEKHGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVSTKK 163          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PASMU (Carbamoyl-phosphate synthase small chain OS=Pasteurella multocida GN=carA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.329e-18
Identity = 49/120 (40.83%), Postives = 75/120 (62.50%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSW-DIVGIDLISDVSGKE 357
            SY  Q V +T PHIGNTG N +D E+   + +GL+IR L +  SN+R + +L +YL   N++ I+D+DTR +TR LR  G+  G + T E   + + LE+++S+  + G DL  +VS  E
Sbjct:   47 SYFRQIVTLTYPHIGNTGTNLEDCEANHVYASGLIIRDLPLLHSNFRSSMSLRDYLQTHNVVAIADIDTRRLTRILRDKGAQAGCIMTGEI-DEAKALELAKSFGSMAGKDLAQEVSTGE 165          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_YERPE2.175e-1842.50Carbamoyl-phosphate synthase small chain OS=Yersin... [more]
CARA_RHOBA2.175e-1841.74Carbamoyl-phosphate synthase small chain OS=Rhodop... [more]
CARA_ECOLI2.175e-1842.50Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_ECO572.175e-1842.50Carbamoyl-phosphate synthase small chain OS=Escher... [more]
CARA_STRAW2.841e-1838.84Carbamoyl-phosphate synthase small chain OS=Strept... [more]
CARA_THISH3.710e-1844.17Carbamoyl-phosphate synthase small chain OS=Thioal... [more]
CARA_PHOPR4.846e-1840.00Carbamoyl-phosphate synthase small chain OS=Photob... [more]
CARA_ERWCT4.846e-1840.83Carbamoyl-phosphate synthase small chain OS=Erwini... [more]
CARA_CAMJE4.846e-1836.97Carbamoyl-phosphate synthase small chain OS=Campyl... [more]
CARA_PASMU6.329e-1840.83Carbamoyl-phosphate synthase small chain OS=Pasteu... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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