FC876295

Overview
NameFC876295
Unique NameFC876295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10329 contig Ccv1_Contig10329:1..361. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THET8 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=carA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGKEP 360
            SY GQ V+MT PH GN GVN  D +S + ++ G V +  S   SN R  +T+G ++    ++GI  +DTRA+ R++R+ G L G ++        +    QE LE  R    +W DI G D+  +VS   P
Sbjct:   50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLP 180          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THET2 (Carbamoyl-phosphate synthase small chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=carA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLS------TEESKSDQELLEMSR----SW-DIVGIDLISDVSGKEP 360
            SY GQ V+MT PH GN GVN  D +S + ++ G V +  S   SN R  +T+G ++    ++GI  +DTRA+ R++R+ G L G ++        +    QE LE  R    +W DI G D+  +VS   P
Sbjct:   50 SYHGQIVVMTYPHQGNYGVNVYDMQSNRPWVRGFVAKEFSRVASNPRAQQTIGEFMEFYGVVGIEGIDTRALVRKIREGGVLKGTIAHASLFGAPDHAFTQEELEALRREAQAWTDIDGRDMTPEVSTPLP 180          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PORYE (Carbamoyl-phosphate synthase small chain OS=Porphyra yezoensis GN=carA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.241e-14
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY  Q V  T P IGNTG+N  D ES    + GL+ +++   +S+WR  ++L  YL+  NI  I  +DTR++T+ LRQ G++ G +ST+         ++     + G+DLI  V+
Sbjct:   51 SYFHQIVAFTYPEIGNTGINNQDIESHSISIKGLIAKNICKISSSWREQQSLVKYLSSNNIPFIFGIDTRSLTQYLRQFGTMNGCISTDNLNHSYLKQKICEIPSMQGLDLIPHVT 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_LACPL (Carbamoyl-phosphate synthase pyrimidine-specific small chain OS=Lactobacillus plantarum GN=pyrAA PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.458e-14
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL 246
            SY G+ ++ T P IGN G+N DD ES +    G+V+  ++   SNWR A++L +YL +  I GI D+DTRA+T+ +R  G++
Sbjct:   45 SYNGEILMFTYPLIGNYGINRDDHESIKPTCKGVVVHEVARRASNWRNAQSLDDYLKQNAIPGIMDIDTRAVTKHIRTKGAM 126          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_POLNS (Carbamoyl-phosphate synthase small chain OS=Polynucleobacter necessarius (strain STIR1) GN=carA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.235e-13
Identity = 44/122 (36.07%), Postives = 69/122 (56.56%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQE-----LLEMSRSW-DIVGIDLISDVS 348
            SY+ Q V +T PHIGN GVN  D ES +   AGLV++ L    S++R    L +YL +  ++GI+ +DTR +TR LR  G+  G +   +     E      LE+++++  + G+DL   V+
Sbjct:   53 SYSRQIVTLTYPHIGNVGVNAQDAESDRIHAAGLVVKDLPKRVSSFRSEGALDDYLTKAGVLGIAGIDTRKLTRILRDKGAQSGAIVAGKVGDSYETLVSKALELAKAFPGMSGLDLAKVVT 174          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_RHOGE (Carbamoyl-phosphate synthase small chain OS=Rhodocyclus gelatinosus GN=carA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 45/127 (35.43%), Postives = 65/127 (51.18%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLST-------EESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY  Q V +T PHIGN GVN +D E+ +   AGLVI+ L +  SN+R A  L  YL     + I+ +DTR +TR LR  G+  G + +        E++    +     +  + G+DL   VS   P
Sbjct:   50 SYCRQIVTLTYPHIGNVGVNEEDVEAAKVHAAGLVIKDLPLRVSNFRAAMPLSQYLEREGTVAIAGIDTRRLTRVLRTTGAQNGCIVSFAPGTVVGEAEIAAAVAAAKAAPSMAGLDLAQVVSADAP 176          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_CHLTE (Carbamoyl-phosphate synthase small chain OS=Chlorobium tepidum GN=carA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.613e-13
Identity = 40/119 (33.61%), Postives = 67/119 (56.30%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKE 357
            SY GQ V+MT P IGN G+  +D ES++ + + L++R  S   SN+    +L   L E  +MG++ +DTR + R +RQ G++  V+ST          + +   ++ G+DL+  V+  E
Sbjct:   48 SYTGQMVVMTYPLIGNYGITPNDNESKKIWASALIVREASNVYSNYESTRSLDATLKEAGVMGLAGIDTRKLVREIRQKGAMRAVISTLCDDVAALKAQAAAIPEMTGLDLVQRVTTGE 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_THEEB (Carbamoyl-phosphate synthase small chain OS=Thermosynechococcus elongatus (strain BP-1) GN=carA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 43/120 (35.83%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVSGKEP 360
            SY GQ V  T P +GNTG   +D+ES +  + G V R++    SNWR  ++L +YL    I  I  +DTRA+TR++R  G++ G +STE     + L ++  +  + G +L   V+ + P
Sbjct:   47 SYYGQIVTFTYPELGNTGTTPEDDESDRPQVRGAVARNICDIPSNWRSQQSLPDYLKAHRIPAIYGIDTRALTRKIRTVGAMNGGISTEILDPVELLQKVLAAPSMQGQNLAKVVTTRTP 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_PORPU (Carbamoyl-phosphate synthase small chain OS=Porphyra purpurea GN=carA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESRQCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSLIGVLSTEESKSDQELLEMSRSWDIVGIDLISDVS 348
            SY  Q V  T P IGNTG+N +D ES+   + GLV +++   +S+WR  E+L  YL    I  I  +DTR++T+ LR+ G++ G +S +         ++S    + G+DLI +V+
Sbjct:   51 SYFQQIVTFTYPEIGNTGINSEDIESQTISIKGLVAKNICKISSSWRQQESLVQYLNRYKIPFIFGIDTRSLTQYLRRSGTMNGCISNKNLNHAYLQRKISEVPHMTGLDLIPNVT 166          
BLAST of FC876295 vs. ExPASy Swiss-Prot
Match: CARA_MYCLE (Carbamoyl-phosphate synthase small chain OS=Mycobacterium leprae GN=carA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.752e-13
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 1
Query:    1 SYAGQFVLMTNPHIGNTGVNFDDEESR--QCFLAGLVIRSLSIGTSNWRCAETLGNYLAERNIMGISDVDTRAITRRLRQDGSL-IGVLSTE---ESKSDQELLEMSRS-WDIVGIDLISDVS 348
            SY  Q V+ T P IGNTG N  D ESR  + ++AG  +R  S   SNWR   TL + L  + I+GI+ +DTRA+ R LR+ GS+  GV S +   E  + + L++  R+   ++G DL+ + S
Sbjct:   46 SYHRQIVVATAPQIGNTGWNDQDGESRDDRIWVAGYAVRDPSPCASNWRATGTLEDELVRQRIVGIAGIDTRAVVRHLRRYGSMKAGVFSGKAMIEPLNIEALVQHVRTQQSMLGADLVGEAS 168          
The following BLAST results are available for this feature:
BLAST of FC876295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
CARA_THET87.241e-1436.64Carbamoyl-phosphate synthase small chain OS=Thermu... [more]
CARA_THET27.241e-1436.64Carbamoyl-phosphate synthase small chain OS=Thermu... [more]
CARA_PORYE7.241e-1436.21Carbamoyl-phosphate synthase small chain OS=Porphy... [more]
CARA_LACPL9.458e-1442.68Carbamoyl-phosphate synthase pyrimidine-specific s... [more]
CARA_POLNS1.235e-1336.07Carbamoyl-phosphate synthase small chain OS=Polynu... [more]
CARA_RHOGE1.613e-1335.43Carbamoyl-phosphate synthase small chain OS=Rhodoc... [more]
CARA_CHLTE1.613e-1333.61Carbamoyl-phosphate synthase small chain OS=Chloro... [more]
CARA_THEEB2.107e-1335.83Carbamoyl-phosphate synthase small chain OS=Thermo... [more]
CARA_PORPU2.107e-1336.21Carbamoyl-phosphate synthase small chain OS=Porphy... [more]
CARA_MYCLE2.752e-1339.84Carbamoyl-phosphate synthase small chain OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC32003A08EF DevOvary1 Citrus clementina cDNA clone C32003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876295 ID=FC876295; Name=FC876295; organism=Citrus clementina; type=EST; length=361bp
AGTTATGCTGGTCAGTTTGTTCTGATGACAAACCCACATATTGGAAACAC
TGGTGTAAATTTTGATGATGAAGAATCAAGACAGTGCTTCCTTGCTGGTC
TAGTGATAAGAAGTTTAAGTATAGGTACTTCAAACTGGAGATGTGCAGAA
ACACTTGGCAATTATTTAGCAGAAAGGAATATCATGGGAATTTCTGATGT
TGACACACGTGCAATCACCCGAAGGTTAAGGCAAGATGGAAGCCTTATTG
GTGTATTAAGCACTGAGGAATCTAAATCAGATCAGGAACTTCTAGAGATG
TCTCGTTCATGGGACATTGTAGGTATTGATTTAATTAGTGATGTTTCAGG
CAAGGAACCTT
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