FC876298

Overview
NameFC876298
Unique NameFC876298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:119..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SHIB3 (Putative bifunctional polymyxin resistance protein arnA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=arnA PE=5 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  184 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 352
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAB (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 1 
Query:   28 LETEMA---GASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            L TE+    GA  R    G P +   + ++G  GFIG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  295 LATELGLVEGARLRGAASG-PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA7 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain PA7) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 1 
Query:   28 LETEMA---GASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            L TE+    GA  R    G P +   + ++G  GFIG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  295 LATELGLVEGARLRGPASG-PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOUT (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain UTI89 / UPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSM (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOSE (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain SE11) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLU (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLI (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12) GN=arnA PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOLC (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOK1 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O1:K1 / APEC GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_SHIB35.075e-2333.16Putative bifunctional polymyxin resistance protein... [more]
ARNA_PSEAB5.075e-2334.26Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEA75.075e-2334.26Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOUT5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSM5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOSE5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLU5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLI5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOLC5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOK15.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32003A12EF DevOvary1 Citrus clementina cDNA clone C32003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bp
AGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAACGGAAATGGCAGGCGC
AAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGATGACGATAT
GTATGATCGGCGCCGGCGGCTTCATCGGCTCTCATCTCTGCGAAAAGATT
CTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTACAATGACAA
GATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCGGCCGGATCC
AGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAAGGCCTCATC
AAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTACGCCGGCGGA
TTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTATTGACGCGC
TTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTGATTCACTTC
TCTACTTGTGAAGTATATGGAAAGACCATTGGAAGCTTTCTTCCTAAAGA
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCAT
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