FC876298

Overview
NameFC876298
Unique NameFC876298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:119..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOHS (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O9:H4 (strain HS) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECODH (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / DH10B) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOBW (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain K12 / BW2952) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO8A (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O8 (strain IAI1) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO5E (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO57 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O157:H7 GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO55 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli (strain 55989 / EAEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO45 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO24 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.075e-23
Identity = 63/190 (33.16%), Postives = 97/190 (51.05%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_ECOHS5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECODH5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOBW5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO8A5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO7I5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO5E5.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO575.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO555.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO455.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO245.075e-2333.16Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32003A12EF DevOvary1 Citrus clementina cDNA clone C32003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bp
AGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAACGGAAATGGCAGGCGC
AAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGATGACGATAT
GTATGATCGGCGCCGGCGGCTTCATCGGCTCTCATCTCTGCGAAAAGATT
CTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTACAATGACAA
GATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCGGCCGGATCC
AGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAAGGCCTCATC
AAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTACGCCGGCGGA
TTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTATTGACGCGC
TTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTGATTCACTTC
TCTACTTGTGAAGTATATGGAAAGACCATTGGAAGCTTTCTTCCTAAAGA
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCAT
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