FC876298

Overview
NameFC876298
Unique NameFC876298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:119..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPY (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPS (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis GN=arnA PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPP (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis (strain Pestoides F) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPN (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPG (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPE (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPB (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERPA (Bifunctional polymyxin resistance protein arnA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERP3 (Bifunctional polymyxin resistance protein arnA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDRYEVYGLDIGSDAISRFLGNPAFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGVKEGLKFT 486
[Close]
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_YERE8 (Bifunctional polymyxin resistance protein arnA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 66/190 (34.74%), Postives = 102/190 (53.68%), Query Frame = 1 
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  +++  LD+ +D I   L+ P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR++  ST EVYG            +  D  +    ED+S  I G I KQRW Y+ +KQL++R+I+A GA+  L+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLRDNRYEVYGLDIGSDAICRFLDNPNFHFVEGDISIHSEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIVFPSTSEVYG------------MCDDKEF---DEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKENLKFT 486
The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_YERPY6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPS6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPP6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPN6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPG6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPE6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPB6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERPA6.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERP36.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_YERE86.629e-2334.74Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32003A12EF DevOvary1 Citrus clementina cDNA clone C32003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bp
AGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAACGGAAATGGCAGGCGC
AAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGATGACGATAT
GTATGATCGGCGCCGGCGGCTTCATCGGCTCTCATCTCTGCGAAAAGATT
CTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTACAATGACAA
GATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCGGCCGGATCC
AGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAAGGCCTCATC
AAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTACGCCGGCGGA
TTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTATTGACGCGC
TTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTGATTCACTTC
TCTACTTGTGAAGTATATGGAAAGACCATTGGAAGCTTTCTTCCTAAAGA
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCAT
back to top