FC876298
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23 Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 1 Query: 28 LETEMA---GASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 L TE+ GA R G P + + ++G GFIG+HL E++L + +++ +D+ +D I+ L +P G I H LE +K D+ + L AI TP +Y PL +F + L +V+YC + KR++ ST EVYG + QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 295 LATELGLVEGARLRGAASG-PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23 Identity = 67/196 (34.18%), Postives = 104/196 (53.06%), Query Frame = 1 Query: 79 PIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 P + + ++G GFIG+HL E++L + +++ +D+ +D I+ L +P G I H LE +K D+ + L AI TP +Y PL +F + L +V+YC + KR++ ST EVYG + QDP + ED S + G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23 Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L E +++ LD+ +D I + P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR+I ST EVYG + ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO81 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O81 (strain ED1a) GN=arnA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23 Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L E +++ LD+ +D I + P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR+I ST EVYG + ED S I G + K RW Y+ +KQL++R+I+A G + GL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23 Identity = 71/214 (33.18%), Postives = 110/214 (51.40%), Query Frame = 1 Query: 25 LLETEMAGASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 L+E GA A L R + + ++G GFIG+HL E++L + +++ LD+ + + + P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + +KR+I ST EVYG + D ++ ED+S I G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 298 LVEGMKIGAKASNAL--RKARLTRVLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSAVDRFIGHPNFHFVEGDISIHTEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYG------------MCDDHSF---DEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFT 488
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22 Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + + I +D+ + I+ + P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A G + GL+FT Sbjct: 318 VLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFISNPRFHFIEGDINIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22 Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + ++I LD+ + ++ P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + D ++ ED S I G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 320 VLILGVNGFIGNHLTERLLKDGRYEIYGLDISASALGRFIDHPHFHFVEGDISIHTEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG------------MCDDHSF---DEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFT 488
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22 Identity = 66/191 (34.55%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L++ ++ LD+ +D I + G R F +I H +E IK D+ + L AI TP +Y PL +F + L +++ C + KR+I ST EVYG T SF ED+S + G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 318 VLILGVNGFIGNHLTERLLVDDNFEVFGLDIGSDAIGRFI------GHERFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRIIFPSTSEVYGMCTDASF----------------DEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22 Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L + ++ LD+ +D I + G R F +I H +E IK D+ + L AI TP +Y PL +F + L +++ C + KR+I ST EVYG V ED S I G I KQRW Y+ +KQL++R+I+A G + GL FT Sbjct: 318 VLILGVNGFIGNHLTERLLQDDNFEVYGLDIGSDAISRFI------GNSRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQKRIIFPSTSEVYGMCSDK---------------VFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFT 486
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22 Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1 Query: 97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663 + ++G GFIG+HL E++L E +++ +D+ ++ I + LL P G I H I++ +K D+ + L AI TP +Y PL +F + L +++YC + KR++ ST EVYG T SF ED S I G + K RW Y+ +KQL++R+I+A G + GL FT Sbjct: 318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486 The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bpback to top |