FC876298

Overview
NameFC876298
Unique NameFC876298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11435 contig Ccv1_Contig11435:119..783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEA8 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa (strain LESB58) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.629e-23
Identity = 74/216 (34.26%), Postives = 112/216 (51.85%), Query Frame = 1
Query:   28 LETEMA---GASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            L TE+    GA  R    G P +   + ++G  GFIG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  295 LATELGLVEGARLRGAASG-PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PSEAE (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas aeruginosa GN=arnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 67/196 (34.18%), Postives = 104/196 (53.06%), Query Frame = 1
Query:   79 PIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            P +   + ++G  GFIG+HL E++L +  +++  +D+ +D I+ L  +P      G I  H         LE  +K  D+ + L AI TP +Y   PL     +F + L +V+YC +  KR++  ST EVYG            + QDP +    ED S  + G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  314 PQRRTRVLILGVNGFIGNHLSERLLRDGRYEVHGMDIGSDAIERLKADPHFHFVEGDIGIH------SEWLEYHVKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLRIVRYCVKYGKRVVFPSTSEVYG------------MCQDPDF---DEDRSNLVVGPINKQRWIYSVSKQLLDRVIWAYG-QQGLRFT 487          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECOL6 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O6 GN=arnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   +  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ECO81 (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O81 (strain ED1a) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 62/190 (32.63%), Postives = 97/190 (51.05%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   +  P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR+I  ST EVYG     +                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFMNHPHFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKY---------------FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 486          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_AERHH (Bifunctional polymyxin resistance protein arnA OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=arnA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.657e-23
Identity = 71/214 (33.18%), Postives = 110/214 (51.40%), Query Frame = 1
Query:   25 LLETEMAGASARLDLDGRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            L+E    GA A   L  R  +   + ++G  GFIG+HL E++L +  +++  LD+ +  +   +  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + +KR+I  ST EVYG            +  D ++    ED+S  I G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  298 LVEGMKIGAKASNAL--RKARLTRVLILGVNGFIGNHLTERLLQDGGYEVYGLDIGSSAVDRFIGHPNFHFVEGDISIHTEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYHKRIIFPSTSEVYG------------MCDDHSF---DEDSSRLIVGPINKQRWIYSVSKQLLDRVIWAYGKKEGLNFT 488          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_PHOLL (Bifunctional polymyxin resistance protein arnA OS=Photorhabdus luminescens subsp. laumondii GN=arnA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  + I  +D+ +  I+  +  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT
Sbjct:  318 VLILGVNGFIGNHLTERLLRDGNYDIYGMDIGSSAIERFISNPRFHFIEGDINIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDDSRLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLKFT 486          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_AERS4 (Bifunctional polymyxin resistance protein arnA OS=Aeromonas salmonicida (strain A449) GN=arnA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.131e-22
Identity = 66/190 (34.74%), Postives = 100/190 (52.63%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +  ++I  LD+    +   ++ P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            +  D ++    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  320 VLILGVNGFIGNHLTERLLKDGRYEIYGLDISASALGRFIDHPHFHFVEGDISIHTEWIEYH------IKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRIIFPSTSEVYG------------MCDDHSF---DEDESRLIVGPIHKQRWIYSVSKQLLDRVIWAYGKKEGLNFT 488          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 66/191 (34.55%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L++   ++  LD+ +D I   +      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C +  KR+I  ST EVYG  T  SF                 ED+S  + G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLVDDNFEVFGLDIGSDAIGRFI------GHERFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYKKRIIFPSTSEVYGMCTDASF----------------DEDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKEGLRFT 486          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_ENT38 (Bifunctional polymyxin resistance protein arnA OS=Enterobacter sp. (strain 638) GN=arnA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.477e-22
Identity = 65/190 (34.21%), Postives = 96/190 (50.53%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L +   ++  LD+ +D I   +      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C +  KR+I  ST EVYG                    V  ED S  I G I KQRW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNFEVYGLDIGSDAISRFI------GNSRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYQKRIIFPSTSEVYGMCSDK---------------VFDEDHSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFT 486          
BLAST of FC876298 vs. ExPASy Swiss-Prot
Match: ARNA_SALTY (Bifunctional polymyxin resistance protein arnA OS=Salmonella typhimurium GN=arnA PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 64/191 (33.51%), Postives = 100/191 (52.36%), Query Frame = 1
Query:   97 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKI-KHLLEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK-TIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFT 663
            + ++G  GFIG+HL E++L E  +++  +D+ ++ I + LL P      G I  H   I++       +K  D+ + L AI TP +Y   PL     +F + L +++YC +  KR++  ST EVYG  T  SF                 ED S  I G + K RW Y+ +KQL++R+I+A G + GL FT
Sbjct:  318 VLILGVNGFIGNHLTERLLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYH------VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASF----------------DEDKSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFT 486          
The following BLAST results are available for this feature:
BLAST of FC876298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PSEA86.629e-2334.26Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEAE8.657e-2334.18Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECOL68.657e-2332.63Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO818.657e-2332.63Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERHH8.657e-2333.18Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PHOLL1.131e-2234.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_AERS41.131e-2234.74Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT91.477e-2234.55Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ENT381.477e-2234.21Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SALTY2.519e-2233.51Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32003A12EF DevOvary1 Citrus clementina cDNA clone C32003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876298 ID=FC876298; Name=FC876298; organism=Citrus clementina; type=EST; length=665bp
AGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAACGGAAATGGCAGGCGC
AAGCGCGAGATTGGATCTGGATGGGAGGCCGATAAAGCCGATGACGATAT
GTATGATCGGCGCCGGCGGCTTCATCGGCTCTCATCTCTGCGAAAAGATT
CTCCTTGAGACCCCTCACAAAATTCTAGCACTCGACGTCTACAATGACAA
GATCAAGCACTTGCTCGAACCGGAGTCACAGACTGGGGCCGGCCGGATCC
AGTTCCACCGACTCAACATCAAGCACGATTCTCGCCTCGAAGGCCTCATC
AAGATGGCAGATCTGACGATAAATCTGGCGGCGATCTGTACGCCGGCGGA
TTACAACACGCGGCCGTTGGACACGATCTACAGCAACTTTATTGACGCGC
TTCCGGTGGTCAAGTACTGTTCGGAGAACAACAAGCGTTTGATTCACTTC
TCTACTTGTGAAGTATATGGAAAGACCATTGGAAGCTTTCTTCCTAAAGA
TAGTCCTCTTCGGCAGGATCCTGCTTACTATGTTCTTAAAGAAGATGCCT
CCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAGGTGGTCGTATGCATGT
GCAAAGCAATTGATTGAAAGGCTGATTTATGCTGAGGGTGCAGAGAATGG
TCTTGAGTTCACCAT
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